Populus alba (white poplar): 118032540
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Entry
118032540 CDS
T07314
Name
(RefSeq) uncharacterized protein isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
palz03009
]
118032540
03012 Translation factors [BR:
palz03012
]
118032540
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118032540
5.6.2.5 RNA 5'-3' helicase
118032540
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Other ribosome biogenesis factors
118032540
Translation factors [BR:
palz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118032540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
AAA_19
Viral_helicase1
DEAD
AAA_22
ResIII
nSTAND3
AAA_16
AAA
UvrD-helicase
RuvB_N
NPHP3_N
PIF1
AAA_25
PhoH
ABC_tran
UvrD_C_2
AAA_7
ATPase
IstB_IS21
AAA_33
Zot
TPK_catalytic
AAA_5
SRP54
TsaE
DUF2786
Motif
Other DBs
NCBI-GeneID:
118032540
NCBI-ProteinID:
XP_034893145
LinkDB
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Position
6:complement(4277785..4285126)
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AA seq
647 aa
AA seq
DB search
METERTKKKAAALSLQEFISITYPLLDLEKESEISASIGSGALRNLDSAQKKGSTILNLK
CVDAQTGLMGKTLLEFQSNKGDVLPAHKFGTHDVVVLKPNKADLGSPALGQGVVYRLKDS
SITVAFDDVPDEGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPAADLIPVLFGERQ
PTKSKKDVTFTPINSHLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRG
SKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSALAND
IRKEMKALNGKLLKTKDKSTRRDIQKELRTLSKEERKRQQLAVIDVIKNADVVLTTLTGA
FSHKLNTTSFDLVIIDEAAQALEITCWLALLKGSRCILAGDHLQLPPTIQSVEAEKKGLG
RTLFERLTDLYGDEVTSMLTVQYRMHELIMNWSSKELYNSKIKAHPSVAAHMLFDLEGVK
RSSSTEPTLLLVDIAGCDMEEKKDEEDSTMNEGEAEVAVAHAKRLVQSGVQASDIGIITP
YAAQVVLLKILKNNDAKLKDMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMN
VAVTRARRQCCLVCDTETVSGDGFLKRLIEHFEEHGEYLSASEYLNE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggagacagagagaacgaaaaagaaagcagcagctctgtcgcttcaagaattcatctcc
attacgtatcctttgctcgatttagagaaggaatcagagatatcagcatctattggttca
ggcgcgttaagaaatttagattctgctcagaagaaaggttctacgattctcaatttgaag
tgcgttgatgctcagacaggtttgatggggaagacgctactggagttccaatctaataaa
ggagatgttttacctgctcataagtttggcacacatgatgtggttgtcttgaaaccgaac
aaagctgatttaggatcccctgctcttggtcaaggtgttgtttatcggttaaaggactcg
tctattactgttgcttttgatgatgtaccggatgagggtttaaatagtccgctacgattg
gagaaagttgcaaatgaggtgacatatcggaggatgaaggatgccttgattcagctgagc
aaaggggtgcatagaggccccgctgctgacttaattcctgttttatttggagagagacaa
ccaacaaagtcaaaaaaggatgttacattcaccccaattaactcccaccttgatcattct
cagaaagatgccatttcaaaggcactgtcatcaaagaatgtatttttgctacatggacct
cctggaactggaaaaaccacaactgtggtggaaattatcttgcaagaagtgaaaagagga
tcaaagattcttgcatgtgctgcttcaaacattgctgtcgacaacattgttgagcgactt
gttcctcacagagtaaagttagtgagattggggcatcctgcacgcttgctacctcaagta
ttggacagtgcacttgatgcacaggttctacggggggacaacagcgctcttgcaaatgac
attcggaaggaaatgaaggcattaaatggaaaattgttgaaaaccaaagataaaagcaca
agaagagacatacagaaggaactcaggactctttcaaaagaagaacgtaaaaggcagcag
ttagctgtgatagatgtaattaaaaatgcagatgtggtgttgacgactttgactggtgca
ttttctcacaagttgaatactacttcgtttgatttggtgattattgatgaagctgctcag
gcacttgagataacttgctggcttgctttactgaagggttcaaggtgtatacttgcagga
gaccatcttcagcttcctccaaccatccaaagtgttgaagctgagaagaaagggttggga
agaaccctctttgaacgcctcacagatctgtatggagatgaagtcacttctatgctcact
gtccagtaccgcatgcatgaactaattatgaactggtcatctaaagagctttacaacagt
aagatcaaagcccatccgagtgttgctgcacatatgctttttgatcttgagggtgtcaag
agatcctcttctacagaaccgacccttcttcttgtagacatagctgggtgtgatatggag
gaaaagaaggatgaagaagatagcacaatgaatgagggagaagctgaagttgcagtggcc
catgcaaagagacttgttcagagtggagtccaggcttctgacattggaataattactcct
tatgcagcacaggttgtcttgctcaagatattgaaaaacaatgatgctaagctaaaggat
atggaaatctcaacagtggatggtttccagggtcgagagaaggaagctatcattatttca
atggttcgatcaaactcaaagaaagaggtggggtttctgagtgaccataggcggatgaat
gtggctgtgacacgggcaagaagacagtgctgtcttgtatgtgacacagagacagtgagt
ggtgatgggttcttaaagcgattaattgagcattttgaggagcacggagagtatctaagt
gcatcagagtacctcaatgaatga
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