Populus alba (white poplar): 118032933
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Entry
118032933 CDS
T07314
Name
(RefSeq) exosome complex component RRP45A isoform X1
KO
K03678
exosome complex component RRP45
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118032933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118032933
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
118032933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
118032933
NCBI-ProteinID:
XP_034893628
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All DBs
Position
1:complement(29894558..29901202)
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AA seq
463 aa
AA seq
DB search
MDGRLANTWRLTVNEKKFIETALASNLRIDGRNPLEYRKITIKFGREDGSSEVHLGQTHV
MGFVTGQLVQPYQDRQNEGMLLIFTEFSPMADPSFEPGHPGESAVELGRIVDRGLRESRA
VDTESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGDDGQEV
TVHPPEEREPLPLIVHHLPIAITFAFLGSQGKMVVDPTHSEEAVMGGRMTVTVNAIGDIC
SIQKAGGEGVPQSVIMHCLQLASMSAESITKKINNAVEAYSTERALRKIKRHPTSAAGNV
SVAGSDVKEQNKTVEQVGGSELSRHHMERLRVVSEETCSSRSNDNDGDIKSSEQGGTSRG
ESNAVSFLGGTSSWDPYLKGVDDDSLKANVASRGISAQHMEQKESKENSPKMDTEKPTED
IKQATLATDTSGTALETNGEKTLKDAVKPKNKRRKRASSMNAS
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggatggaagattagcgaatacatggagattaacagtgaacgagaagaaattcatagag
actgctttggcttcaaaccttagaattgatggtcgcaatcctcttgagtatcgtaaaatt
accatcaagtttggcagagaagatgggtcatcagaggtgcatctaggacagactcatgta
atgggttttgtgacaggtcaattagttcaaccttatcaagaccgacagaatgaagggatg
cttttgattttcacagagttctctccaatggctgatccttcatttgagccaggccaccct
ggggaatctgcagtggagttgggtcgaatagtagatcgtggtctaagggagagcagggct
gtggatacagaatctctttgtgttctttcaggaaaattagtgtgggccattcgtattgac
cttcatatcttagataatgggggaaatcttgttgatgctgccaatattgctgctttggct
gctctcttaacatttcgaagaccagaatgcactttaggtggtgatgatggtcaagaagta
acagtacatccaccagaggaaagagaaccacttcctttgatagtccaccatctccctata
gcaataacttttgcatttttaggcagtcagggcaaaatggtggttgatcctacccacagt
gaggaggctgttatgggtggaagaatgactgtaacagttaatgcaattggtgatatttgt
tcaattcagaaagctggaggggagggtgtgccacagagtgttattatgcattgtttgcaa
cttgcttctatgagtgctgaatccataacaaagaagataaataatgcagttgaagcatac
agcacagagagagcattgcgcaagatcaagcgccaccctacttctgctgctggcaatgtt
agtgtagctggtagtgatgtaaaagagcaaaataaaactgttgagcaggtgggaggtagt
gagttgtcgaggcatcatatggagagattgagggtggtatctgaggaaacctgcagcagt
agaagtaatgacaatgatggtgatatcaaatcatctgaacaaggtggaacaagtcgagga
gagagcaatgctgtgagttttcttgggggtacatcaagctgggatccttatttgaagggt
gttgatgatgattccctgaaagctaatgtagcctcacgtggaatatcagcgcagcatatg
gaacaaaaagaaagcaaggaaaatagtcccaaaatggacacagagaaaccaacagaagat
attaaacaagccactttagctacagatacatctggaactgcactggaaacgaatggagag
aaaactttgaaggatgccgtgaagcccaagaacaagaggagaaagagggcttccagcatg
aatgcaagttag
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