Populus alba (white poplar): 118033071
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Entry
118033071 CDS
T07314
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118033071
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118033071
Spliceosome [BR:
palz03041
]
Complex C
Other components
Complex C specific factors
118033071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
AAA_7
ResIII
AAA_11
nSTAND3
T2SSE
AAA_29
AAA_23
Motif
Other DBs
NCBI-GeneID:
118033071
NCBI-ProteinID:
XP_034893805
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All DBs
Position
4:4620442..4631321
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AA seq
702 aa
AA seq
DB search
MSQQFWKPGSEKPRILEDEEGGVVFFGPSLSSASSSSSRFGYASIGSQRQRLPVYKYRTA
ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQTVASRVAE
EMDVKLGEEVGYAIRFEDVTNPAATMIKFLTDGVLLREIMNDPLLTKYSVIMVDEAHERS
ISTDILLGLLKKIQRRRPELRLIISSATIEAKSMSDFFQTSKKHRGPEDHEFVPKKVPAI
LSVEGRGFNVHIHYVVEPVSDYVQATVSTVLSIHEQEPAGDILVFLTGQDDIDAAIRLLT
EEAHASRKISSGLIVLPLYSSLPRADQDLVFSPTPRGKRKVVISTNIAETSLTLEGVVYV
VDSGFSKQQFYNPISDIENLVVVPISKASARQRAGRAGRVRPGKCYRLYTEEYFVNEMSS
VGIPEMQRSKLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLT
SPVGFQAAEIPLDPMISKMILSSNQLGCSDEIITIAAVLSIQSIWVSGRGVQKELDEAKL
RFAAAEGDHVTFLNVYKGFLQSGKSSQWCHKNYMNYQAMKKVIEIREQLRRTALRLGIVL
KSCEGDMLAVRKAVTAGFFANASRLEAFSHNGMYKTVRGSQEVYIHPSSVLFRVNPKWVI
YHSLVSTDRQYMRNVMTVDPSWLTEAAPHFFQRHRRPDPIVH
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaacaattctggaaaccaggcagcgagaaaccccgcattctcgaagacgaagaa
ggcggtgtcgttttcttcggcccctctctctcttccgcctcctcctcttcctccaggttt
ggatatgcaagtattgggagtcaaaggcagagattgcctgtttacaagtacagaacagca
attctgtacctcgtagagactcacgccaccactattatcgtcggcgagaccggtagcgga
aaaaccacgcaaatccctcagtatcttaaagaggctggttgggctgatggtggacgtgtt
atagcttgcacccagccgagacgactcgcagtccagacggttgcttcaagggtggctgaa
gagatggatgtcaagcttggagaggaagttggttacgcaattcgatttgaggatgttacc
aatccagctgcaactatgataaagtttctaacagatggggtattattgagagaaattatg
aacgatccgcttttgaccaagtatagtgtcatcatggtagatgaggctcatgaaaggtct
atttcaactgatattctactaggtctcctgaaaaagatccagcgacgtcgacctgaacta
cgcctgattatctcatctgctacaatcgaggcaaaatctatgtcagatttcttccagacg
agcaaaaagcatcgaggaccggaagatcatgagtttgttccaaagaaggttcctgcaatt
ttatctgttgagggcagagggtttaatgtacacatacattatgttgtggagcctgtctca
gactatgttcaggctactgtttcaactgtattgtcaattcacgagcaggaacctgcaggt
gacattcttgtatttctcactggtcaagatgatattgatgctgctattcggctgcttact
gaagaagctcatgccagcagaaagatctcttcaggattgattgttttgcctttgtactcc
agtctcccacgtgcagaccaggatctggtgttttctccaactcctagagggaagaggaaa
gtggtgatatcaaccaatatagcagagacgtcgttgacactggagggcgtcgtctatgtt
gttgacagtggattctcaaaacagcagttctacaatccgatctcagatattgaaaatcta
gtggtggtccccatatcaaaggcatctgctagacaaagagctggtagagctggaagagtt
cgacccgggaagtgttacaggttatacacggaagagtactttgtaaatgaaatgtcttcc
gttgggatcccggagatgcaaaggtcaaaacttgtttcctgtgtgattcagttaaaagcc
ttgggaatagacaatatactaggctttgattggccagcatctccaccacctgaagcaatg
attcgagcacttgaagttctttattcactaggagtccttgatgatgatgctaagcttact
tcacctgttgggtttcaagcagcagagattccattagatccaatgatatcaaaaatgata
ctatcttcaaaccagctaggatgttctgatgagatcatcacaatcgcagctgttctctcc
atccagtctatttgggtttctggtaggggggtgcaaaaggaattagacgaagccaagttg
agatttgcagctgctgagggtgaccatgttacattcctaaatgtttataaaggttttctt
caatctggtaaatcatcacagtggtgtcataagaattatatgaattaccaagctatgaag
aaggtaattgaaattagggaacagctcagaagaacagcgctgagattaggcatagtctta
aaatcttgtgaaggggacatgctggctgtacggaaagcagttactgctggattttttgca
aatgcaagtcgtttagaagcattcagtcataacgggatgtacaagactgttagaggttct
caagaagtttatattcatccttcgtctgtgttgttcagagttaatccaaaatgggttata
taccactctcttgtctcaacagaccggcaatacatgcgcaatgttatgactgttgatcct
tcttggctaacagaggctgctccacattttttccagcgtcatcggagaccggatcccatt
gttcactaa
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