Populus alba (white poplar): 118033416
Help
Entry
118033416 CDS
T07314
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
palz
Populus alba (white poplar)
Pathway
palz03030
DNA replication
palz03420
Nucleotide excision repair
palz03430
Mismatch repair
palz03440
Homologous recombination
palz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118033416
03420 Nucleotide excision repair
118033416
03430 Mismatch repair
118033416
03440 Homologous recombination
118033416
03460 Fanconi anemia pathway
118033416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
palz03000
]
118033416
03032 DNA replication proteins [BR:
palz03032
]
118033416
03400 DNA repair and recombination proteins [BR:
palz03400
]
118033416
Transcription factors [BR:
palz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118033416
DNA replication proteins [BR:
palz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
118033416
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
118033416
MMR (mismatch excision repair)
118033416
DSBR (double strand breaks repair)
HR (homologous recombination)
118033416
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
118033416
NCBI-ProteinID:
XP_034894292
LinkDB
All DBs
Position
15:12122010..12125520
Genome browser
AA seq
632 aa
AA seq
DB search
MNAAIGKSVSPDGISKLLSIPKPDSFTHLPEIILQVTNLEPKGKSYGFDASDGKMKIKAI
FSSRLSSEILSGNIQNLCLIQVLDYTVNEIPSKSEKFLIVTKCEVVSPALEKEIKEVVEQ
EESDMGMPLKKPKLENEVKSENIKEAKGLILKPKQEIVAKSAAQIVHEQHGNMAPAARMA
MTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYRNARGEGCVFNVELTDGDGTQIQATMF
NEAAKKFYDRFELGKVFYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEASDEAACIPE
TKFKFVPIDQLGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVPKRDIVVADETKKTV
VVSLWNELATSVGQELQDIADKSPVVAIKSLKVGDFQGISLSTLGKSIVQVNPVIAESEK
LRSWYDSEGKETSMASVGSGLSPSTKSGARSMYSDRVSLSHITSNPSLGEDKPAFFSIRA
YISFIKPDQTMWYRACKTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDASGEG
WVSAFNEEAEKIIGCSADELDLLKSQIGEENTYQQRLKEATWNPHLLRISVSQNEYNNEK
RQRMTVRAVAPVDFAAESRFLLEEISKMKGSQ
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcagcgataggaaaatcagtgagcccagatggaatatcaaaactgctttcaatt
cctaaaccagattcatttactcatcttcctgaaatcatccttcaagtcacaaatcttgag
cctaaaggcaaatcttatgggttcgatgctagtgatggaaagatgaagatcaaagcgatc
ttcagttcacgcttgtcatctgagatcctctctgggaatattcaaaatctttgtctcatc
caagttcttgattatacagtcaatgagatccccagtaaatctgagaagtttttgatcgta
acaaagtgtgaggttgtttcacctgcacttgaaaaggagatcaaggaagtggtcgaacag
gaagaatcagacatgggtatgccgttgaagaagccaaagctagaaaatgaagtaaagagt
gaaaatatcaaggaagcgaaggggcttattttgaagccaaagcaagaaattgttgctaaa
tctgctgctcaaattgtacacgaacagcacggaaatatggccccggctgcccgaatggcc
atgacacgaagagttcaccctcttgtttcattaaatccttaccaaggtaactggaccata
aaagtccgggttacaagcaaaggaaatatgcgtacctataggaacgcgagaggagaaggg
tgtgttttcaatgtggaattaacagatggagatggcacacaaatacaagcaacaatgttc
aatgaggctgcaaagaaattctatgataggtttgagctggggaaggttttctacatatcg
aaagggacgctcagggttgctaacaagcagtttaagacagtgcaaaatgattatgagatg
accttgaatgaaaactctgaagtggaagaggctagcgatgaagcagcttgtattcccgaa
actaaattcaagtttgtcccaattgatcagttgggtccctatgtcaattcaaaagatctt
gttgatgttattggaattgttcaaagtgtttcaccgacaacgagtatacggaggaagagc
aacaacgagactgttccaaagcgtgatattgttgtagctgatgagacgaagaagactgtt
gtggtgtcattgtggaatgagcttgcaacaagtgtgggacaggaattgcaggatattgct
gataaatctcctgtagttgcgatcaaatcccttaaagttggagattttcaaggtatatct
ttgtccaccctgggcaagagcatagtgcaagtcaacccagttattgctgaatcagagaag
ctgagaagctggtatgattctgaaggtaaagagacttcaatggcctctgttggctctggt
ttgagcccttcgaccaagagtggggcaaggtccatgtactctgatcgagtatctctatct
catataacaagcaacccatccttgggggaggacaagcctgcatttttcagcattagagca
tacataagcttcatcaaacctgaccagacaatgtggtatcgggcttgcaagacgtgcaat
aaaaaagttactgatgctctggggggtggatattggtgtgaaggatgccagaagaatgat
gcagagtgcagcttaaggtacattatggtggtaaaagtttctgatgcgagtggtgagggt
tgggtttctgcattcaatgaagaagctgaaaagatcattggttgctctgctgatgaactt
gacctactcaaatcacagataggagaagagaacacctaccaacaaagattgaaagaagcc
acttggaatcctcatcttttgagaatcagtgtctcccagaacgagtacaataacgagaag
aggcaaaggatgacagttagggctgttgctccagttgattttgctgctgagtccagattt
ttgcttgaagagatttcaaagatgaaaggttctcaatag
DBGET
integrated database retrieval system
