Populus alba (white poplar): 118033460
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Entry
118033460 CDS
T07314
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
palz04131
]
118033460
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
palz04147
]
118033460
Membrane trafficking [BR:
palz04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
118033460
Exosome [BR:
palz04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118033460
Exosomal proteins of bladder cancer cells
118033460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
TPR_COPA_B
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_Aladin
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_At4g14310
Zn_ribbon_19
Aa-Ago_N
zf-CHCC
Motif
Other DBs
NCBI-GeneID:
118033460
NCBI-ProteinID:
XP_034894350
LinkDB
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Position
15:13394512..13399903
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMR
LTQMNSDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP
EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRFFEFSTQRDTQVIPIRRPG
TTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPRDSIARGDAVPEAKRGVGGSAVF
VARNRFAVLDKSSNQVLVKNLKNEVVKKSSLPISADAIFYAGTGNLLCRTEDRVVIFDLQ
QRLVLGELQTPFIKYVIWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDN
GVFIYTTLNHIKYCLPNGDSGIIRTLNVPIYITKISGSTIFCLDRDGKNRTIVIDATEYI
FKLSLLKKRYENVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLVTGNLEKLSK
MLKIAEVKNDVMGQFHNALYLGDVRERVKILENAGHLPLAYATAKVHGLEDVVERLAAEL
GDDIPSFPEGKTPSLLVPPAPIMCGGDWPLLRVMKGIFEGGLDNMGKGGADEDEEAADGD
WGEELDMVDVDGLQNGDVSAILEDGEAAEENEEEGGWDLEDLELPPEADTPRASVSARSS
VFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIKNFVPLKSMFLDLYSG
SHTYLRAFSSTPVISVAVERGWNESASPNVRGPPALVFNFSQLEEKLKAGYKATTTGKFT
EALRLFLGILHTIPLIVVDSRREVDEVKELIIIVKEYVLGLQMELKRREMKDNPVRQQEL
AAYFTHCNLQAPHLRLALQNAMTVCFKNKNLATASNFARRLLETNPPNENQARAARQVMS
AAERSMTDAAQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSQEGQLCTVCDL
AVVGADASGLLCSPSQIR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaagtttgagaccaagagtaatagagtgaaggggctgagtttccacagtaag
agaccatggatccttgctagccttcatagtggtgtgatccagctatgggactatcgtatg
ggcactctcattgatcgctttgatgagcatgatggccctgttcgtggtgttcatttccac
aaatcccagcctctttttgtatctggaggtgatgattacaagattaaagtatggaactac
aaattgcataggtgtctgtttacgctccttggacatcttgattacattcgtactgtgcag
tttcatcatgaatacccatggattgtgagtgctagtgatgatcagaccatccgcatttgg
aactggcagtctcgtacttgcatttctgtgttgacaggacacaatcattatgtgatgtgt
gcctcattccaccctaaagaagaccttgttgtgtcggcttctctagatcagactgttcgt
gtttgggatattggtgctctgagaaaaaagacggtgtcccctgctgatgacatcatgagg
ttgactcagatgaacagtgacctttttggtggtgttgatgcagttgttaagtatgttttg
gaaggccatgaccgaggtgtcaactgggctgcattccaccctacacttcctttgattgtt
tcaggagcagatgatcgccaagtgaagttgtggcgcatgaatgacacaaaggcctgggaa
gtggacacattaagaggacacatgaacaatgtgtcatgtgttatgttccatgccaaacaa
gatataattgtatctaattcagaggataaaagcattcgtgtctgggatgtaactaaacga
actggagtccaaactttccgccgagagcatgaccgattctggatccttgcatcccatcct
gagatgaatcttctggctgcaggtcacgacagcggcatgattgtctttaagttagagaga
gaaaggcctgcttttgctgtgagtggtgattctttgttctatgctaaagatcgcttttta
cgattttttgagttttcaactcaaagagatacacaagtaattcccattcgacgacctggt
actacaagcctgaatcaaagtccaagaactctttcgtacagtcctacagaaaatgctgtc
cttatctgttcggatgtggatggaggatcttacgagctgtacgtcatccctagagacagc
attgctaggggcgatgctgtgccagaggcaaagagaggtgttggtggatctgctgtcttt
gtagctcggaataggtttgctgtgcttgacaagagcagcaatcaagtcttagttaaaaac
ctcaagaatgaagttgtcaaaaagagcagtcttcccatctctgcagatgctatattctat
gctggcactggtaacttgctttgcaggacagaggatagagtggtcatatttgatctccag
cagaggcttgttcttggggagctgcagacaccttttatcaaatatgttatttggtccaat
gacatggaaagtgttgccttgctaagcaaacatgccattatcattgctagcaagaagctt
gtgcaccagtgcactctccacgaaacaattcgtgtaaagagtggagcctgggatgataat
ggtgttttcatttacacgactttgaatcatatcaaatactgcctgcccaatggagatagt
ggcattatcagaaccctcaatgtccccatatatattactaagatttctggaagtactatc
ttttgcttggatcgggatgggaagaataggactattgttattgatgcaacagaatacatc
ttcaaactatctctgctgaagaagagatatgaaaatgttatgagcatgataaggaactcc
cagctttgtggtcaggcaatgattgcttatttgcaacagaaggggttcccagaagtcgct
ctgcattttgtgaaagatgagagaactaggtttaatttggctttagagagtggaaatatt
cagattgctgttgcttcagcaaaggaaattgatgagaaagaccactggtataggttgggg
gttgaagctcttcgccaagggaatgcaggtatagttgaatatgcctaccagaggacaaaa
aattttgagaggttatctttcctttatctcgtaactgggaatttggaaaaactgtctaag
atgcttaaaattgctgaagttaaaaatgatgtcatgggtcagtttcacaatgccctgtat
ttgggtgatgtcagagaacgtgttaagatcctggagaatgctggccatttgccacttgct
tatgccacagctaaggtccatggcctagaggatgttgtggaacgtctagcagctgagttg
ggagatgatattccgtcttttccagagggcaaaacaccatcccttctggtgcctccagcc
cctattatgtgcggtggtgattggccacttctgagagttatgaaaggtatatttgaaggt
gggctggataatatgggcaaaggtggtgctgatgaggacgaagaagctgctgatggtgac
tggggtgaggaactggacatggtcgatgtggatggtttgcaaaatggggatgtctcagca
attttggaggatggggaagcagctgaagaaaatgaagaggagggaggatgggaccttgaa
gatctggagctacctcccgaggcagacacaccaagggcttctgtcagtgcccgctcatca
gtttttgtggctccaactcctggcatgcctgtaagtcagatttggattcagagatcttca
ctcgctgctgaacatgccgcagctggcaattttgatacggctatgcgactactcaacaga
caacttggaattaaaaactttgtcccgttaaagtccatgtttcttgatctttactcaggc
agccatacctatcttcgtgcattttcatctaccccagtgatatcagtggctgttgaacgg
ggatggaatgagtctgccagccctaatgttaggggtcctccagctctggtgttcaatttc
tctcagttggaagagaagcttaaggctggttacaaggccacgacaactgggaaatttact
gaggcacttagactcttccttggcattcttcacacaattcctctgattgttgttgattcg
aggagggaagttgatgaagtcaaggagttgattattatagtcaaagagtatgttttgggt
ctgcaaatggagcttaagaggagggagatgaaagacaatccagtgcgccaacaagagctt
gctgcctacttcacccactgcaaccttcaagctcctcacttaaggcttgctcttcaaaat
gcaatgactgtttgcttcaagaataagaaccttgctacagcatctaactttgccaggcgg
ctactggagacaaaccccccgaatgagaaccaggcaagggctgccaggcaagtaatgtca
gctgcagagaggagcatgacagatgccgctcagctgaactatgatttcagaaatccattt
gtggtatgtggtgcaacctatgttccaatttaccgaggacaaaaggatgtctcttgtcca
tactgtggttcccgatttgtaccaagccaggaagggcagctgtgtactgtgtgtgatctt
gcagtagttggggcagatgcttcagggttgctctgttccccttcccagatacgatga
DBGET
integrated database retrieval system