KEGG   Populus alba (white poplar): 118034779
Entry
118034779         CDS       T07314                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
palz  Populus alba (white poplar)
Pathway
palz03030  DNA replication
palz03410  Base excision repair
palz03420  Nucleotide excision repair
palz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:palz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118034779
   03410 Base excision repair
    118034779
   03420 Nucleotide excision repair
    118034779
   03430 Mismatch repair
    118034779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:palz03032]
    118034779
   03400 DNA repair and recombination proteins [BR:palz03400]
    118034779
Enzymes [BR:palz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     118034779
    6.5.1.6  DNA ligase (ATP or NAD+)
     118034779
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     118034779
DNA replication proteins [BR:palz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    118034779
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     118034779
DNA repair and recombination proteins [BR:palz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     118034779
   NER (nucleotide excision repair)
    Other NER factors
     118034779
   MMR (mismatch excision repair)
    Other MMR factors
     118034779
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HTH_36 HVO_A0114
Other DBs
NCBI-GeneID: 118034779
NCBI-ProteinID: XP_034896070
LinkDB
Position
9:1214595..1229705
AA seq 800 aa
MLRLRPCVSIRSIYSTRHSKLLSPLIPSLLFSKSPSFLKSHTLYLNPNSTMSTSRPSAFD
ALMSNARAAASAKKKTQPQPQSKSSSPKKRKTLDHPQNPDKTLNSVQNPQTDESKKLINT
PDSSNEPKSEPNSRSDSLLKVNESNKLRVEDKNTELKSKIVLLKKKAGDFKPEMMANWEK
GERVPFIFVSLAFDLIANETGRIVITDIVCNMLRTVMDTTPEDLVAVVYLLANKVAPAHE
GVELGIGEALIIKALAEACGRKEKEVKKQYKDLGDLGLVAKASRSSQSMMRKPDPLTITK
VFNTFQQIAKESGKDSQDKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAAL
GQAAVYTEEHSTPPPHIQSPLEEAAKIVKQVYSVLPVYDKIVPALLSDGVWNLPKTCSFT
PGVPVGPMLAKPTKGVSEIVTKFQDMEFTCEYKYDGERAQIHYLENGSVEIYSRNSERNT
GKFPDVVAVISRLKRPSASSFILDCELVAYDREKKKILPFQILSTRARKNVVMSDIKVNV
CIYAFDMLYLNDQPLIQKELKVRREHLYSSFEEEPGFFQFATAITSNDLEEIQKFLDTAV
DASCEGLIIKTMNKDATYEPSRRSHNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTGVY
GAFLLACYNSNNEEFQSICKIGTGFSEQVLEERSASLRSQVIPKPKSYYRFGDTIKPDVW
FEPKEVWEVKAADLTISPVHRAAIGEVDPDKGISLRFPRLVRVREDKSPEQASSSEQVAE
MYNAQKHNHQNNQDDNDDDD
NT seq 2403 nt   +upstreamnt  +downstreamnt
atgctcaggctccgtccatgcgtctctatacgctccatttactccacgcgccactccaag
cttctctctcctctcattccctctctcttattctctaaatccccatcatttctaaaatcc
cacactctctatctaaaccctaattccacaatgtccacctctcgcccctccgccttcgat
gccctcatgtccaacgcacgtgccgccgcctccgctaagaaaaaaacccaaccccaaccc
caatcaaaatccagctcccccaaaaaacgcaaaaccctagaccatcctcaaaaccctgat
aaaaccctcaattccgtacaaaacccccaaactgatgaatctaaaaagctaattaacact
ccagattcatcgaatgagcctaaatcagaaccaaattctaggtctgatagcttattaaaa
gtcaatgaatcgaataaactgagagttgaggataaaaatacggagttgaagagcaagatt
gtgttgttaaagaagaaagccggggattttaagccggagatgatggctaattgggagaaa
ggagagagggttccgtttatatttgtttctctggcttttgatttgatagcgaacgagaca
gggaggattgtgattactgatattgtttgtaatatgttgaggactgtaatggatactact
ccggaggatttggtggctgtggtttatttgttagctaataaggttgcccctgcgcatgag
ggagtggaacttgggattggggaagctttgattattaaggcgctggcggaggcgtgtggg
aggaaagagaaggaggttaagaagcagtataaggacttgggagatttgggccttgttgca
aaagcaagtcggtcatcccaatctatgatgcgcaagcctgatccattaacaattactaag
gttttcaacacatttcaacagattgctaaggaatctgggaaggatagtcaagacaagaaa
aagaaccatatcaaggcgcttcttgttgcagccacagactgcgagcctctgtatctaatt
cgtctgcttcagacaaagttgagaattggactggcagaacagactcttttggctgccctg
ggacaagctgctgtatatactgaagagcattctactcctcctccacacattcagtctcct
ttagaagaggctgcaaagattgttaaacaagtttactctgtgcttcctgtctatgataaa
atagtccctgctcttcttagtgatggcgtatggaatcttcccaagacatgcagcttcaca
cctggtgttccagttggacctatgctggcaaaaccaaccaaaggggtttctgagatagta
actaaatttcaggatatggaattcacctgtgaatacaagtatgatggagaacgtgcccag
atacattacttggagaatggctcggttgagatatatagtcgaaattctgagcgaaatact
ggaaaatttcctgatgttgttgctgtgatttcccgattaaagaggccctcagcaagctca
tttattctggattgtgaactagttgcgtatgatagagaaaaaaagaaaattctccccttt
cagatcctcagcacccgggcccgaaaaaatgtggtgatgagtgatatcaaggttaatgtt
tgcatatatgccttcgacatgttgtatcttaatgaccaaccacttattcagaaagaactg
aaagtccgtagagagcatctttacagttcattcgaggaagaacctggattttttcagttt
gcaactgcaataacatcaaatgatcttgaagagatacaaaaattcctcgacactgctgtt
gatgccagttgtgagggtttaatcatcaaaacaatgaataaggatgctacatatgaacct
tcaaggcgatcacataactggctgaaattgaagaaagattacatggaaagtattggagac
tcactagatctagtgcctattggtgctttccatggtcgtggaaaacgtacaggtgtctat
ggtgcttttctccttgcttgttataatagcaacaacgaagaattccagagcatatgtaaa
ataggcactggattttctgaacaagtgcttgaggaacgttctgctagtctccgttcacaa
gtgattcccaaaccaaagtcatactatagatttggagatactattaaaccagatgtgtgg
tttgaaccaaaggaggtgtgggaggtgaaagcagcagacttgactattagccctgttcat
cgtgctgcaattggtgaagttgatcctgacaagggtatttcactaagatttccacgcctt
gttcgagttcgagaagacaagtctccagagcaagcctcatcatcagagcaggttgctgag
atgtataatgcccaaaagcataatcatcaaaacaatcaagatgacaatgacgatgatgat
tga

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