Populus alba (white poplar): 118035181
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Entry
118035181 CDS
T07314
Name
(RefSeq) exosome complex component RRP45A-like isoform X1
KO
K03678
exosome complex component RRP45
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118035181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118035181
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
118035181
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
118035181
NCBI-ProteinID:
XP_034896586
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MDGRLANTWRLTVNEKKFIETALASNLRIDGRNPLEYRKITIKFGREDGSSEVQLGQTHV
MGFVTGQLVQPYQDRQNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRIVDRGLRESRA
VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECTLGGEDGQEV
IVHPPEEREPLPLIVHHLPIAITFSFFGGEGKMVVDPTQSEEAVMGGRMTVTVNANGDIC
AIQKPGGEGVPQSAIMHCLQLASLSAESITKKIKNAVEAYNTERALRKIKRHPTSGAGNV
SVAALDVTEQNKTVEQVEVSELSRHHMERLKLVPDETCSGRGNDNDGDIKPSKQGGTGRG
QGNAMNFLGGPSSWDPYSKVVDPDSLKASLASRGVSTQHVKQKGSEENSPKTDPEKPTED
IKQATLATDTSGTALQTNGEKTLKDAVKPKNKRRKRASPSMKGS
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggatggaagattagcgaatacatggagattaacagtgaacgagaagaaattcatagag
actgctttggcttcaaaccttagaattgatggtcgtaatcctcttgagtatcgcaaaatt
accatcaagtttggaagagaagatggatcatcagaggtgcagctaggacagactcatgta
atgggttttgtgacaggtcaattagttcagccttatcaagaccgacagaatgaagggaca
ctttctatttttaccgagttctctccgatggctgatccttcattcgaaccaggccgccct
ggggaatctgcagtggagttgggccgtatagttgatcgtggtctaagggagagcagggct
gtggatacagaatcgctttgtgttcttgccgggaagttagtgtgggccattcgtattgac
cttcatatcctagacaatgggggaaatcttgttgatgctgccaatattgctgccttagcc
tctctcttaacgtttagaagaccagaatgcactttaggaggtgaagatggtcaagaagtg
atagtacatccaccagaggaaagagagccacttcctttgatagtccaccatctccctata
gcaataactttttcatttttcggtggtgagggcaaaatggttgttgatcctacccaaagt
gaggaggctgttatgggtggaagaatgactgtaacggttaatgcgaatggtgacatttgt
gcaattcagaaacctggaggggagggtgtgccacagagtgctattatgcattgtttgcaa
cttgcttctttgagtgctgaatccataacaaagaagataaaaaatgcagttgaagcatac
aacacagagagagcattacgcaagatcaagcgccaccctacttctggtgctggcaatgtt
agtgtagctgctcttgatgtaacagagcaaaataaaaccgttgagcaggtggaagttagt
gagttgtcaaggcatcatatggagagattaaagttggtacctgatgaaacctgcagcggt
agaggtaatgacaatgatggtgatatcaaaccatctaaacaaggtggaacaggtcgagga
cagggcaatgctatgaattttcttgggggtccatcaagctgggatccttattcgaaggtc
gttgatcctgattccctgaaagcctctctagcctcacgtggagtatcaacacagcatgtg
aaacaaaaaggaagcgaggaaaatagtcccaaaactgatccagagaaaccaaccgaagat
attaaacaagcaactttagctacagatacatctggaactgcactgcaaacaaatggagag
aaaacattgaaggatgctgtgaagcccaagaacaagaggagaaagagagcttctcccagc
atgaaaggaagttag
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