Populus alba (white poplar): 118035353
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Entry
118035353 CDS
T07314
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118035353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118035353
03019 Messenger RNA biogenesis [BR:
palz03019
]
118035353
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118035353
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118035353
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_12
zf-CCCH_3
PL48
PP_kinase_N
Motif
Other DBs
NCBI-GeneID:
118035353
NCBI-ProteinID:
XP_034896782
LinkDB
All DBs
Position
11:complement(11771926..11787156)
Genome browser
AA seq
699 aa
AA seq
DB search
MEDPEGVLNFDFEGGLDSGPTNPSASMAAIPSDNQGSAMAAAPNTATTGASTTTTTTTNN
SSDSGAADMQAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECRE
QDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVVEAVQKTQQLNSYNYGN
SNKFFQQRTAGFPQQIEKSLITTIKPSGTESANLQQQQQTTQTQTQTQTQTQTPNLPNGQ
QQPNTLNRIATPLPQGISRYFIVKSCNLENLELSVQQGVWATQRSNEPKLNEAFDSAENV
ILIFSVNRTRHFQGCAKMTSKIGASVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTR
HLRNPFNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAIAVAAEAKREEEKEKGV
NPDSGGENPDIVPFEDNEEEEEEESEEEVEAFGHPLGAAAQGRGRGRGIMWPPHIPIARG
ARPIPGMRAFPPMMMGADGFSYGSVTPDSFGMPDLFSVAPRGFAPYGPRFSGDFTGATSG
MMFPGRPSQPGAVFPAGGFGMMMGSGRAPFMGGMGPTASNPLRGPRPGGMFAPLLTSSSQ
NNNRSFKRDQRAAPSDRIDRHIIESDLVRGAAGESNDETRYPQETYNASHEDQFGAVNSN
RNDESESEDEAPRRSRHGEGKKKRRGSEGDANPGSDHKQ
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggaggacccagagggggttttaaacttcgacttcgagggcggcctcgactcggggccc
acgaaccctagcgcctccatggcagcgatcccatctgacaatcagggatccgcaatggca
gctgcgccgaataccgcaaccaccggcgccagcaccaccaccaccaccaccaccaacaac
agcagcgactctggtgcggcggacatgcaggcggggcgacggagcttccggcagactgta
tgtcggcactggcttcgaagcctttgtatgaaaggcgacgcctgcggattccttcaccaa
tacgacaagtctagaatgcctgtatgtcggttttttagactttatggagagtgcagggag
caggattgcgtttacaagcacaccaatgaagatatcaaggagtgcaatatgtacaagctg
gggttttgtcccaatggtccagactgcaggtataggcatgcaaagttgcctggacctcca
cctccggttgtagaagctgttcaaaagactcagcaattgaattcttacaattatggaaac
tctaacaaattttttcaacaacggactgctggttttccccaacagatagaaaagtctctc
attaccaccataaaaccttcaggaacggaatctgctaatttgcagcagcagcagcagacg
acgcagacgcagacacagacacagacacagacacagacaccgaatcttccaaatggccag
caacagcctaatacattgaacagaattgcaacgcctttacctcaaggaatatctaggtac
ttcattgttaagagctgcaaccttgaaaatttggagttatctgtgcagcaaggagtatgg
gcaacacaaaggagcaatgaacctaaactgaatgaagcttttgactctgctgaaaatgta
atcttgattttctcagtaaaccggactcggcatttccagggttgtgcaaagatgacatcc
aaaattggtgcttctgttggtggaggtaattggaaatatgcacacggaactgcacattat
gggaggaatttctcagtcaaatggttgaagttgtgtgaactgtccttccacaaaactcgt
cacttgagaaacccgttcaatgagaacttaccagtgaagattagtagagattgtcaggag
ctagaaccctctattggtgagcagttggcgtccttactttatctggagccagatagtgaa
ctcatggcaattgcagttgcagctgaagcaaaacgagaagaggaaaaagaaaaaggagtc
aatcctgacagtggtggtgaaaaccctgacattgtcccatttgaggacaatgaagaagag
gaggaggaagaaagtgaagaggaggtggaagcctttgggcatcctcttggagcagcagct
caaggcagagggagaggtagaggaatcatgtggcctcctcacattccaattgcccgtggg
gcaagacccatccctggcatgagagctttcccccccatgatgatgggtgctgatggtttt
tcatacggatctgttacacctgatagcttcggaatgccagatctcttcagtgtggctccc
cgtggatttgccccatatggtccgaggttttctggtgattttactggtgctacatctggc
atgatgtttcctgggcggccttcccagccaggagctgtgtttccagctggtggatttggg
atgatgatgggttcaggacgtgctccgtttatggggggaatgggtcccactgcatcaaat
cctcttcgaggccctcggccaggtggcatgtttgcaccacttctcacatcatcttcccag
aacaataaccggtcttttaagagagatcagagagcagcacctagtgatcgaattgacaga
catattatagaatcagatctggtcaggggtgcagctggggaatcaaatgacgagacaaga
tacccgcaggaaacatacaatgcttcccatgaagatcaatttggtgctgtaaatagcaat
agaaacgatgagagtgaaagtgaggatgaggcacccagacggtcaaggcacggggaggga
aagaagaagcggcgaggttcagaaggagatgctaatcctggctcggatcacaagcagtaa
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