Populus alba (white poplar): 118035417
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Entry
118035417 CDS
T07314
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118035417
03015 mRNA surveillance pathway
118035417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118035417
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118035417
mRNA cycle factors
P-body specific factors
118035417
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
118035417
NCBI-ProteinID:
XP_034896864
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All DBs
Position
3:554363..562408
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AA seq
511 aa
AA seq
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MKVGQSDKTKVVVRHLPPGVSQPMFVEQIDLAFSGRYNWLSFRPGKSSQKHQSFSRAYID
FKRPEDVIDFAEFFNGHLFVNEKGTQFKAIVEYAPSQHVPKQWSKKDGREGTILKDPEYL
EFLEFIAKPVENLPSAEIQLERREAERSGVAKDAPIVTPLMDFIRQKRAAKSGPRRILSN
GKPSRRAGGSGSRSSSSSKRGSEKKRASTTMYVLRDTAKGTSGKEKSIYAQVPKLDDRQL
SKAVTLGSGSGTEVSEEETAVSGITDTGKKKILLLKGKEKEISLQQSISPSDRNIISSTT
LKSQRHESSGRAIKSILLHKDSRRIQSSGVQSEPQMQTSNLEKDKRPPRPPHALVLKDAN
GTPDDKVVGNDLHGFPNEKQERRTRNKDRPDRVVWTLRRSEGSYASDESLSSSASLSTQS
GLDSSQVNHGDVKADTLNLRSGEVKALGSGRSNHSSLDNGSHKHSGRRGPPHPVRDADGS
TVEGKTLKRGGASGYGSHEKQVWVQKSSSGS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttggtcagtctgacaagaccaaagtggtggtacgccacttgccaccgggggtt
tctcagccgatgttcgtcgagcaaatcgaccttgctttctctggccgctacaactggctc
tcctttcgtcctggcaagagcagccagaagcatcaatccttttctagagcctatattgac
tttaaaaggcctgaagatgttattgactttgccgagttctttaacggccacctatttgtt
aacgagaaaggcactcaatttaaagctattgttgagtatgctccttcacagcatgtccca
aagcagtggtctaagaaagatggtcgtgaaggcaccatattgaaagatcctgagtatttg
gagttccttgaatttattgcaaagcctgtcgagaatcttccaagtgctgaaatacaattg
gagagaagagaagctgaaagatctggtgttgcaaaagatgctcccattgttaccccttta
atggactttattcgacagaaaagagctgctaagagtggacctcggaggattttgtccaat
gggaaaccgagcagaagggctggtggcagtggaagtcggagctcttcctcatcaaaacga
ggttctgagaagaagagagcttcaacaacaatgtatgttttaagggacactgcgaaaggc
acaagtggaaaagagaaatcaatttatgcgcaggttcccaagctagatgatcggcaacta
tctaaagctgtaactttaggttctggatctgggactgaagtatcagaagaggaaactgca
gtttctggaattactgataccgggaagaagaaaatcctgcttctgaaagggaaagagaag
gaaatttcactgcaacagagcatatcaccatctgatagaaatatcattagttcgaccact
ttaaagagccagcgtcatgaatcctctggaagggcaatcaaaagcatactcttacacaag
gattcgcgtcgaattcaatcctctggagtccagtctgagccacagatgcaaacctcaaat
ctagaaaaggacaaacgtcctcctcggcccccacatgcattggttttgaaggatgcaaat
ggaacaccagatgacaaggttgttgggaatgatttgcatggttttccaaatgagaagcag
gaaaggcgaaccagaaataaagatagacctgatcgtgtagtgtggactctccgcagatca
gagggatcctatgcaagtgatgaatccttgtcatcatctgcatctctatctacacagtca
gggttggattcttcacaagtaaaccatggagatgttaaagcggacaccttaaatttaagg
agcggagaagtaaaagcacttggaagcgggcgtagtaatcattcttctttagataatgga
tcacataaacattctggtcgtcggggacctccacatcctgtgagggatgctgatggctcc
actgttgaggggaagactcttaaaagaggtggtgcttctggttacgggtcccatgagaag
caagtgtgggttcagaagtccagttctggttcttag
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