KEGG   Populus alba (white poplar): 118035942
Entry
118035942         CDS       T07314                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
palz  Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:palz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:palz03009]
    118035942
Ribosome biogenesis [BR:palz03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    118035942
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_TEP1_C NBCH_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_VPS8 ANAPC4_WD40 Beta-prop_WDR41 Beta-prop_IP5PC_F WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_Vps41 WD40_Gbeta Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_Aladin WD40_MABP1-WDR62_1st PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_LRRK2 VPS11_N Beta-prop_DCAF12 Beta-prop_ACSF4 DUF7899 WDR54 WD_LRWD1 Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 118035942
NCBI-ProteinID: XP_034897510
LinkDB
Position
14:2076875..2080472
AA seq 451 aa
MNTKMEEEIVIASSSIDGGIGCWDLQTGTEHLRYKSCASPPHGLISVGRRFLASSQLQDP
KASSSAILYWSWSRPQVEVKCFPEEPIKPLVANSEGTYLVGGGLSGNIYFWEVATVRLLK
KWRAHYRAVTCLVFTEDDSLLVSGSEDGSVRVWPLLMIFDDYQMEQASQLYEHSFQEHTL
RVTDIVTGYRGGNAIIISASEDRTCKVWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAG
GRDGKIHIAALGADSSSIKSHWLHIIGSLSSHSKNVTCLAYSTNGNVLLSGSEDGMIRVW
DPKTHNIVRVFKHAKGPVNNINVLKRPAYLNPRMLSNVQASSRRHGLSLPPPLSKYINTM
DEKVISAVVNLQATCNNPLDASSISSQVINCQIKELQQQGSAAAAEMEVEKLKLDCTQSM
QMLQRWKKTYDNLHEFCVDELLEGCNVKSAN
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgaacaccaaaatggaagaagagattgtcatagcatcctcctcaatcgacggcggcata
ggttgttgggacctccaaacaggaaccgaacaccttcgctataaatcttgcgcctcccct
cctcacggccttatttcagttggccgccgcttcctcgcctcttcccagttacaggaccct
aaagcatcttcaagcgccatcctctactggtcctggtctaggcctcaggtggaggttaag
tgctttcctgaggagccaataaagccgcttgttgctaatagtgaaggcacttatcttgtt
ggaggtggtttatctgggaatatttacttttgggaggttgcgacagttagattacttaag
aaatggcgtgcccactacagggctgtcacttgcttggtttttacagaagatgattctctt
ttggtttctggttctgaggatggatctgtccgagtctggccacttctcatgatatttgat
gattatcaaatggagcaggcaagccagctttacgaacatagctttcaagagcatactttg
cgtgtcactgatatagtaacaggttatagaggaggcaatgcaattataatttcagcttcc
gaggatcgaacgtgtaaggtgtggagtttatctaaggggatattattaagaaatatagtg
tttccctcaataattgattcaattacgttggaccctggtgagcatgtattctatgctggt
ggcagagatggtaaaatacacattgctgcgctcggtgctgatagctcatctatcaaaagt
cattggttgcatatcattggttcattatctagtcacagtaagaatgtaacttgcttagca
tatagtacaaatggaaatgtcttgctttctggatcagaagatggcatgattcgagtttgg
gacccaaaaacgcataacatagttcgggtgttcaagcatgcaaaaggtcctgtgaacaat
atcaatgttcttaagcgaccagcttacttgaaccctcgaatgttatcaaatgtacaagct
tcttcaagaaggcatggattatcattaccacctccactcagtaaatatatcaatacaatg
gatgaaaaagtcattagtgcagtcgttaatctccaggctacttgcaataaccctctggat
gcttcatccatcagctctcaagtgattaattgtcaaatcaaagaactccagcaacaaggt
tcagctgctgcagctgaaatggaggtggagaagctaaagcttgattgcacgcaatcgatg
caaatgcttcagaggtggaagaaaacgtatgacaacttgcatgaattttgcgtggacgag
cttttagaggggtgtaatgtgaaaagtgcaaattag

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