Populus alba (white poplar): 118036021
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Entry
118036021 CDS
T07314
Name
(RefSeq) E3 ubiquitin protein ligase RIN2 isoform X2
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
palz
Populus alba (white poplar)
Pathway
palz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118036021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
palz04121
]
118036021
Enzymes [BR:
palz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
118036021
Ubiquitin system [BR:
palz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118036021
Multi subunit type E3
ERAD complex
118036021
LMBR1L-GP78-UBAC2 complex
118036021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
CUE
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_2
zf-RING_11
zf-RING_5
zf-C3HC4_3
zf-RING_16
zf-C3HC4_4
zf-RING_Vps41
E3_UbLigase_EDD
zf-HC5HC2H
FANCL_C
Endonuclease_7
PHD
Motif
Other DBs
NCBI-GeneID:
118036021
NCBI-ProteinID:
XP_034897605
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Position
1:complement(11436056..11444988)
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AA seq
583 aa
AA seq
DB search
MGVSYIAISAVCTAVSFVGLQCWTEVSLERLRSDGLIGESFINSENVSHALELLFSSYAT
IALLVNFVFNVFVLLNLCLKTIFFGELYSSETRKLVERLINYAIYKGTFLPLVIPPTISQ
TGLWSIWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVYSALLLVLSVDFFWIQMC
FVIYRSTGSSMFLLLFFEPFSIAFETMQAMLVHGFQLLEIWFHHSAGISTNCQRFKFFDA
MRAGSLLEWKGVLIRNWGFLLDMATLLMALGHYVYIWWLHGVAFHLVDAVLFLNIRALLS
AMIKRIKGFIKLRIALGALHAALPNATSEELRAYDDECAICREPMAKAKRLHCSHIFHLV
CLRSWLDQGLNEIYSCPTCRKPLFVDRPENEASTHTGEALTDEQLAHQINEGRELQNTPG
HVLPAGVFPNQIRNSMEGSPWRSAGLDSSWLPTWPSQGGDGAGPSTAMRSVGLGRVQMMM
RHLASVGETYAQTALEDAAWSLWPMNPSHATPSTSFIPPAAGGRRPGGTGGLHMSTTNDN
IANILAMAETVREVLPHVPDELILQDLQRTNSATVTVNNLLQR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgagttatatagcgatttcagcagtctgtacggctgtgagttttgtgggtctt
caatgttggacagaggtgtctttagagagattgagatcagatggtttgattggtgagagt
tttatcaactcggagaatgtcagccatgcgcttgagcttctgttcagttcttatgcaacc
attgcattgttggtgaattttgtattcaatgtatttgtactactcaatctttgtctcaag
actattttctttggagagttgtattcttctgaaactcgaaaactagtggaacgtcttatt
aattatgctatttacaagggaacctttctgccactggttattccaccaacaatttctcaa
acaggtctctggtcaatttggttgactgttctatgctctttaaagatgtttcaagcacta
gctagagatcgacttgaacgtttgaatgcatctccttctgcaactccatggacatatttt
cgtgtttattcagcattgttgctggtcctctctgttgactttttctggatacagatgtgt
tttgtgatatacagaagtacgggctcgtccatgtttctgttgttgttctttgagcctttc
agtattgcttttgagaccatgcaagctatgctggttcatggatttcagttgcttgagatt
tggttccatcattcggctgggattagcacaaattgccaaaggttcaagttttttgatgca
atgagagcaggttcattgttggagtggaaaggcgttcttatccggaactgggggtttttg
ctagacatggcaaccttattaatggcacttggtcattatgtgtatatatggtggcttcat
ggcgtggcatttcatcttgtggatgcagttctctttttgaatatacgtgcattactaagc
gctatgataaagcgtataaaaggattcatcaagcttagaattgctttaggtgcccttcac
gcagcacttcctaatgcaacatcggaagagctacgagcatatgatgatgaatgtgctatc
tgtagggaacctatggctaaggccaaaaggctacattgcagtcacatatttcatcttgtt
tgcttgagatcttggttggatcagggtttaaatgagatatactcatgtcccacttgtcgg
aagccactttttgtagacaggcctgaaaatgaagcaagtactcatactggagaagctcta
acagatgaacaacttgctcatcaaataaatgaaggacgtgaactgcaaaacactccaggt
catgtgctgcctgctggagtattccctaaccagattcggaactctatggaaggcagccct
tggagaagtgcagggttggattcaagttggctacccacttggcccagccagggtggagat
ggggctggtccctcaacagctatgagatctgttggattgggtagggttcagatgatgatg
aggcatcttgcatctgtgggagaaacttatgcacaaactgcccttgaagatgctgcttgg
agcctttggccaatgaatccatctcatgctactccatctacctctttcatccctcctgct
gctggtggaagacgccctggtggcactggtggtttacatatgagcaccacaaatgacaac
atagcaaacatacttgccatggctgagacagtgcgggaggttttgccccacgttccggat
gagttgatactccaggacttgcagcgaacaaattctgctactgttactgtaaataatctc
ctgcaaaggtga
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