Populus alba (white poplar): 118036404
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Entry
118036404 CDS
T07314
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118036404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118036404
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118036404
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118036404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF5646
ZapG-like
DUF4407
Motif
Other DBs
NCBI-GeneID:
118036404
NCBI-ProteinID:
XP_034897975
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All DBs
Position
13:complement(5063685..5076146)
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AA seq
892 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKTIEKEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLTVKKGKTRPPRLTHLEASITRHKL
HIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDELYNSLPLDKVDS
LEDLVTIGPPGLVKGAPVHSLKTSLVTSAPQMPATVASAHHEGAVVQDHADDTTSQDSNS
DIVARTPPAKSSMVGSSAASIPTGNHAPISVNVHAQTLPGLSAASPTLPGSTSVRGVLEN
AAPSNPSSPATLGNSTKEEEIAGFPGRRSSPSLADAGLAKGIGRGSLSSQPSSSIPLSPG
VIPSNGAHGSVPLASDIAKRNILGTDDRIGSAGMVQPLASPLSNRMILPQAGDGTNAVDT
SSAGEAATMGGRVFSPLVTGMQWRPGSSFQNQNEPGQFRARTEIAPDQREKFLQRLQQVQ
QQGHSNILGMPPLTGGNHKQYSAQQNPLLQQFNSQSSSVSQASLGLGVQSSGFNTVTSAA
LQQPNSIHQQSSQQVVMSSGAKDAEPGHSTVEEQQLKQNLPEDSTTESALTSGLGKSLVN
EDELTSPYAMDTSSGASSSLTEPLQVPRDIDLLPGQLLQSSQPSSGLGVIGRRSVSDLGA
IGDNLTGSAVNSGAMHNQLYNLQMLEAAYHKLPQPKDSERARSYIPRHPVATPPSYPQVQ
LPMASNPAFWERLSMHSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR
HEEPKVTTDEYEQGTYVYFDFHVGNEDKQGWCQRIKTEFTFEYNYLEDELIV
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagccgcaagttacaaggcgagatcgatcgtgttctaaagaaagttcaagaa
ggcgtcgacgtttttgacagtatctggaacaaggtttatgacacggacaacgtgaatcaa
aaagaaaagtttgaggcagacttgaagaaggaaatcaagaaactgcagagatacagggac
cagatcaaaacatggattcaatccagtgaaataaaggataagaaggttagcgcatcgtat
gagcaggctctggtggatgctcgtaagactatcgagaaagaaatggagagatttaagatc
tgcgaaaaggaaactaagacaaaagcattttccaaagaaggattgggccagcaacccaaa
actgatccaaaggagaaggctaaatcagagacaagggattggttgaataatgtggttggg
gaactggaatctcagattgatagctttgaagctgagattgaggggcttactgttaagaaa
ggaaagacaaggccacccagactgacacatttagaggcatccattacacgacacaagctt
catataaagaagttagagttgatcctgaggctactagacaacgatgagttgagtcctgag
caggttaatgatgttaaagacttcctggatgactatgtagaacgtaatcaggaagatttt
gatgattttagtgatgttgatgagctttacaactcattaccattagacaaggttgactct
cttgaagacctggttacaattggtcctcctggtcttgtgaagggtgcccctgttcacagc
ttaaagacttccttggtgacatctgctcctcaaatgcctgccactgttgcttctgctcat
catgagggtgctgttgttcaagatcatgccgatgatactacttcacaggatagtaattct
gatattgttgcaagaactcctcctgccaaaagtagcatggttggttcttctgctgcatca
ataccaactgggaaccatgcacctatttctgtgaatgttcatgctcaaacattgcctggt
ttgtcagcagcctcaccaactcttcctggttcaacttctgttcgaggtgtcttggaaaat
gcagctccttctaatccttcttctcccgcaacacttggcaattctacgaaggaggaagaa
attgcaggcttccctggccgtagatcatcaccttctcttgctgatgctggattagcaaag
ggcattggtagaggtagcctctctagccagccctcatctagtatccccctcagtcctggt
gttattcctagcaacggggctcatggttcagtacctttagcttctgacattgcaaagaga
aatattttgggaactgatgatagaattgggagtgctggaatggtgcagcctctggcttcc
ccgcttagtaaccgaatgatcttgcctcaggctggtgatggaaccaatgcagttgatact
agtagtgctggtgaagctgctactatgggtggcagagttttctctcctttggtcactggc
atgcaatggagacctgggagttcctttcaaaatcagaatgaaccgggccaatttcgtgca
agaactgaaatagctcctgatcagagagagaaatttttgcagcgtcttcagcaagtccag
cagcaaggtcacagtaacattcttggcatgccgcctcttactggtgggaatcataagcag
tattctgcccaacaaaacccccttttgcagcagtttaattctcaaagttcatctgtctct
caagctagtttaggacttggagtgcagtcatcaggcttcaatactgttacatctgctgct
ttacagcagccaaattccatccatcagcagtctagtcagcaagttgtgatgtcaagtggt
gcgaaagatgctgaacctggccattcaacagttgaggagcagcagctaaagcagaattta
cctgaggattcaaccaccgaatctgctcttacatctgggcttggaaaaagtcttgtgaat
gaggatgaactcacatctccatatgcaatggatacttcttctggggcatctagttccttg
acagagcctttacaagtgccaagagatattgatctcttgccagggcaactcctacaatcc
agtcaaccatctagtggcctaggtgttattggccggagaagtgtttcggaccttggtgcc
attggcgataatctcactggatctgctgtaaattctggggcaatgcacaatcagttatac
aatttacagatgcttgaggctgcatatcacaagcttcctcaacctaaagactcagaacga
gctaggagctatattccaaggcacccggtagccaccccacctagctatcctcaagttcag
ttaccaatggcaagtaaccctgcattctgggaacgtctaagcatgcatagttatggaact
gataccttgttctttgcattttactatcaacagaatacctatcagcagtatctggctgcg
aaagagctaaagaagcaatcttggagataccacagaaaatacaacacctggtttcaacgg
catgaggagccaaaagttaccactgatgaatatgaacaggggacatatgtgtattttgat
ttccatgttggcaatgaggacaaacaaggatggtgtcaaagaatcaagacagagttcact
tttgagtataactatcttgaagatgaactcattgtttag
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