Populus alba (white poplar): 118036457
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Entry
118036457 CDS
T07314
Name
(RefSeq) protein PIR isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118036457
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118036457
Factors involved in mRNA localization
Other mRNA localization factors
118036457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
WASH-4_N
Motif
Other DBs
NCBI-GeneID:
118036457
NCBI-ProteinID:
XP_034898047
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All DBs
Position
13:4347662..4367517
Genome browser
AA seq
1283 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDEQAEVQGAGVLVSSERGATNSPIEYTDVSAYRLSLSEDTKA
LNQLNGLIQEGKEMASVLYTYRSCVKALPQLPESMKQSQADLYLETYQVLDLEMSRLREI
QQWQASASSKLAADMQRFSRPERRINGPTITHLWTMLKLLDVLVQLDHLKNAKASIPNDF
SWYKRTFTQVSVQWQDIDSIREELDDLQIFLSTRWAILLNLHVEMFRVNTVEDILQVLIV
FAIESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPII
PAFPDLHLSPAAILKELSIYFQRFAAQTRLLTLPAPHELPPREAQDYQRHYLIVNHIGTI
RAEHDDFTIRFASSLNQLLLLKSIDGADVDWCKEVKGNMYDMVVEGFQLLSRWTARIWEQ
CAWKFSRPCKDAIPSESNGTSESFFDYEKVVRYNYSAEERKALVELVSYIKSVGSLMHRC
DTLVADALWETIHAEVQDFVQNTLATMLKTTFRKKKDLSRIVSDMRTLSADWMANTNKPE
SYLQSHGGDESKGNFFYPRPVAPTATQVHCLQFLIYEVVSGGNLRKPGGLFGNSGSEIPV
NDLKQLETFFYKLGFFLHILDYSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWML
VDHVLESQNAGLLESVLMPFDIYNDSAQQALAALRQRFLYDEIEAEVDHCFDLFVSKLCE
IIFTYYKSWAASELLDPSFLFASDNREKYSVQPMRFTALFKMTRVKLLGRTVDLRRLLSE
RMNKVFRDNLEFLFDRFESQDLCAVVELEKLVEILKHAHGLLSKDLSIDSFSLMLNEMQE
NLSLVSFSSRLATQIWSEMQNDFLPNFILCNTTQRFVRSSRVPLVPMQKPSVPSAKPNFY
CGTQELNSAHQSFARLHSGFFGIPHMFSTVRLLGSRSLPWLIRALLDHISNKVSTLEPMI
TGLQEALPKSIGLLPFDGGVTGCMRVVKENLNWGTKSELKAEVLRGIKEIGSVLYWMGLL
DVVLREVDTMHFMQTAPWLGLFPDADGQILLSQDGGDSPVVNLFKSATAAVMSNPGCPNP
TSFYTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCCKWSAAPKTGFIDITTSK
DFYRIYSGLQIGHLEDSVQVSSNFEVLGDSVAWGGCTIIYLLGQQMHFELFDFSYQVLNV
AEVEAGLLTQAHKNPHVAQGWETLLEAMKKARRLNNHVFSMLKARCPLEDKIACAIKQSG
APLHRIKFENTVSAFETLPQKGA
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggcagttccagtagaagaagccatagcagctctctctaccttttctcttgaggatgag
caagcagaggtgcaaggagctggggttttggtttcatctgaaagaggagcaaccaacagt
cctattgagtatactgatgtttctgcttaccgcttatctctatcagaagacacaaaagct
ctcaatcagctgaatggacttatccaagaggggaaggagatggcatcagtgctttataca
tatcgtagctgtgtcaaagcacttcctcagcttcctgaatccatgaagcaaagtcaggct
gacttgtatctggaaacatatcaagttttggacttggagatgagtcgtctgcgtgaaatc
cagcaatggcaagcatccgcttcatcaaaactagcagctgatatgcagcggttttctagg
cctgagcggcgcattaatggccccacaattactcatctatggaccatgttgaagttgctt
gatgttttagttcaacttgatcatcttaaaaatgctaaggcaagcatacccaatgacttc
tcatggtacaagaggacatttacccaagttagtgttcagtggcaagatattgattcaata
agggaggagttagatgatttacagatattcttaagcacaaggtgggcaatcttattgaac
ttgcacgtcgaaatgtttcgggtgaacactgtagaagatattcttcaagttctgatagtt
tttgccattgagtcattggaattggattttgcgcttttgtttccggagaggcacattctt
ctacgtgttttaccagttcttgttgtcttggcaacctcatcagaaaaagacagtgagtca
ctgtataagagggtaaaaatcaacaggctgataaatatttttaagaatgatccgatcatt
cctgccttccctgatcttcatctttctcctgctgcaatcttgaaagagctgtccatttac
tttcagagatttgctgcacaaactcgtctcctcacccttccagcacctcatgagctccca
cctcgggaggcacaagattatcagaggcattatctcattgttaatcacataggaactatt
cgtgccgagcatgatgatttcacaattcgttttgcttcatccttgaatcagctattgtta
ttgaagtcaatagatggtgcagatgttgactggtgcaaagaagtcaagggaaacatgtat
gatatggttgttgaaggtttccagctcttaagcagatggactgcacgaatttgggaacaa
tgtgcttggaaattttctcgcccatgcaaagatgcaattccttcagaatctaatggaacc
tcagaatcattttttgactatgaaaaggtggtacgatataattacagtgctgaggagagg
aaagcacttgttgagctcgttagttacattaagagtgttggatcactgatgcatcggtgt
gacacattggtagctgatgccttatgggaaacaatacatgctgaagtccaagattttgtc
caaaacacattagccaccatgttgaagactacctttagaaagaagaaggacctgtcgagg
attgtttctgacatgaggactctttcagcagactggatggcaaatacaaacaagcctgaa
tcttatttacagtcacatggaggtgatgaaagcaaagggaacttcttttatccaaggcca
gtggcacccacagccacacaggtccattgcttgcagttcttgatatatgaagtggtgtct
ggtggtaatcttcggaagcctggtggactctttggcaacagtgggtctgagattcctgta
aatgatttaaagcagttggagaccttcttttacaagcttggcttcttcctgcatatattg
gactattcagcgactgttgcaactttgacagatcttggtttcttatggtttagagaattt
tatttggagtcatctcgtgtgattcagtttcctattgaatgttctcttccctggatgctg
gtagatcatgtgctcgagtcccagaatgcaggtcttcttgaaagtgttctgatgccattt
gacatctacaatgattcagctcagcaagctctggctgccttaaggcagcgattcctctat
gatgaaattgaagctgaggtggaccattgttttgatttatttgtttcaaaactctgtgaa
attattttcacttattacaagagttgggcagcaagtgaactacttgatccatcattcctc
tttgcctcagacaatagagaaaaatattctgtacagcctatgaggttcactgcactattt
aagatgactagagtaaagttacttgggaggaccgttgatttaagaaggttgctttctgaa
aggatgaacaaggtttttagagacaatctcgagtttctttttgatcgttttgagtctcag
gatctatgtgccgtggtggaattagaaaaacttgtggaaatcttaaagcatgcccatggc
ctgctttcaaaagatctttcaatagactcattcagtctcatgttgaatgagatgcaagaa
aacttatctcttgtgtcattttctagtcgacttgctactcagatttggtcagagatgcaa
aacgatttcctgccaaacttcatcctatgcaacactactcagcgttttgtccgatcatca
agagttcctcttgttcctatgcaaaagccgtcagttcccagtgcaaagcctaacttctat
tgtggtactcaggagttgaattctgcgcatcaaagctttgcgcgtttgcacagtgggttc
tttggaattccccatatgttttctactgttagacttctaggatccagatcactgccttgg
cttatccgggccctgctagatcatatatcaaataaggtaagtacacttgaaccgatgatt
actggattgcaagaagcgttgccaaaatctattggactgctcccttttgatggaggagtc
acaggctgtatgagggttgtcaaagaaaatcttaactgggggacaaaatcagagctcaaa
gcagaggttcttcgaggaataaaggagattggcagtgtgttatattggatggggcttctt
gatgttgtattgagggaagttgataccatgcatttcatgcaaacagccccttggctgggc
ttgtttcctgatgcagatggtcaaatattgctttcacaggatggtggggatagtcctgtt
gtcaatcttttcaaatcagccactgctgcagtcatgtccaaccctggttgtccaaatcca
acatctttttataccatgtcaaaacaggcagaagctgcagatcttctttacaaagctaac
atgaatactggaagtgtgctggaatatgcccttgcttttaccagtgctgcattggataaa
tattgctgtaaatggagtgcagctcccaagacagggttcattgacattacaacttcaaag
gatttttaccgtatatatagtggccttcaaattggacacctggaggattctgttcaagta
tcatcgaattttgaagtgttgggtgactcagttgcttggggtggttgtaccattatctac
ttgcttgggcagcagatgcattttgaactctttgatttttcatatcaagtcctcaatgtt
gcagaagtagaggctggattactcacccaagcacataagaatccccatgttgcccaggga
tgggaaaccctattagaagcaatgaagaaagcaagaaggttgaacaaccatgttttctca
atgctaaaagcccgttgcccccttgaggacaagatagcttgcgctatcaagcaaagtggt
gcccctctgcatcggatcaagttcgagaacactgtttcagcatttgaaacattgcctcaa
aaaggtgcctga
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