Populus alba (white poplar): 118036488
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Entry
118036488 CDS
T07314
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X1
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118036488
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
palz01009
]
118036488
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118036488
03036 Chromosome and associated proteins [BR:
palz03036
]
118036488
Protein phosphatases and associated proteins [BR:
palz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
118036488
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
118036488
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
118036488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
DUF929
DUF4187
Motif
Other DBs
NCBI-GeneID:
118036488
NCBI-ProteinID:
XP_034898099
LinkDB
All DBs
Position
13:4035991..4046037
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AA seq
538 aa
AA seq
DB search
METKTSDVAMLDAELLQLQEFSALDFISYPGFAQKLFDQWLSLPDANKLVASLVNDAKTG
APLNISGNTSNAHAATGSSLPSMFPAGSTPPLSPRSSTGSPRVTKQRVGPSNLGSPLKVV
SEPIKELIPQFYFQNGRPVPNELKEQCLIRIDHFFYGHSDGLQIHEFKSITKEVCKLPSF
FSTTLFRRIDVNSTNFVTRDAFLNYWINGNMLTLGIATQIFTILKQPDLKYLTQENFKPV
LRELLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRSRNGHLTLRELKRGNLIDAMQH
ADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFS
QVARKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGILTRNEMQFFYE
EQLHRMECMAQEPVLFEDILCQIIDMIGPEDDGYITLRDLKGCKLSGSVFNILFNLNKFM
AFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDVEDASNGSAEVWDESLEAPF
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgaagacgagcgatgttgcgatgttagatgcggagttgcttcagctacaagag
ttttctgctttagatttcatatcttaccctggctttgcccaaaaactcttcgatcagtgg
ctctcccttcctgatgccaataagctggtggcatccctggttaatgatgccaagacaggt
gctcccttgaatatctctggaaatacatctaatgcacatgctgccactggcagttcctta
ccgtccatgtttcctgcggggagtacaccacctctttccccccgaagttcaaccggttct
cctcgcgtgacaaaacaaagggttggcccatcaaatttaggttctcctctaaaagtagtc
agtgagccaataaaggagttgataccacagttttattttcaaaatggtcgtccagtgcca
aatgagctaaaagaacaatgcttgattcggatcgatcacttcttctatggccattcagat
ggactgcagatacatgagttcaaatcaatcactaaggaagtatgcaagctgccgtcattc
ttttcaacaactctatttagaaggattgatgttaatagcaccaattttgtgacaagggat
gcttttctcaattattggataaatggcaacatgttgacattgggtatagctacccaaata
ttcacaattttaaagcaaccagatctcaaatacctcacccaggaaaactttaaacctgtg
cttcgagaattactggcaactcatcctggattggagtttttacagagcacacctgagttt
caggaaagatatgctgaaactgtaatatacagaattttttactacataaatagatccagg
aatggtcatcttaccctcagggagctgaaacgtgggaatttaattgatgcaatgcaacat
gcagatgaagaagaggacataaataaagttttgaggtacttttcttatgagcacttttat
gtgatatactgcaagttttgggagctggacacagatcatgattttcttatcgacaaagag
aaccttattagatatggaaatcatgcacttacctaccggattgttgatagaatattttcc
caggttgcaagaaaatttactagtaaggttgaaggaaagatgggatatgaagattttgtg
tatttcatactttcagaggaagacaagtcatctgagcctagtcttgagtattggttcaag
tgcatagatttggatggaaatggaattctgacacggaatgagatgcaattcttttacgag
gagcagttgcatcgaatggaatgcatggctcaagagcctgtgctttttgaagatatattg
tgccagataattgacatgattggaccagaggatgatggctatatcaccctccgtgaccta
aaaggttgtaaactttcagggagtgttttcaacatccttttcaacctcaataaatttatg
gcctttgaaacccgcgatccatttctcattcgtcaggagcgtgagaatccaacattgaca
gagtgggatcgttttgcacatagagaatatattaggctttcaatggaagaagatgttgaa
gatgcttctaatggtagtgcagaagtttgggatgaatcacttgaggctccattctga
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