Populus alba (white poplar): 118036506
Help
Entry
118036506 CDS
T07314
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118036506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118036506
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
118036506
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
118036506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ammonium_transp
EXOSC1
ECR1_N
DUF3082
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
118036506
NCBI-ProteinID:
XP_073260154
LinkDB
All DBs
Position
13:complement(4297509..4311850)
Genome browser
AA seq
1085 aa
AA seq
DB search
MQEEGEMVTPGEVLGKATELKAGKGAYIGSYRDTDIQYVFSSLTGLRRTLSPSPDSPDQR
PTVEVTGHKAHGAVPEPGSVVIARVTKVMAKTASADIMCVGPKSVQEKFTGIIRQQDVRA
TEIDKVDMHLSFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAESAAGATMVPISWTE
MQCPLTGQIEQRKVAKRKCDQNLRLVRTAVIFVYGSRYIVLLELFMLSDSRYSYQKNKKT
TFCLGRMDEGIRQYSVEKGTEEIIYKANRNTMPCLPLLLQPLPTLSSSCPTLLFLQNPHH
VPSVTSLKKPKKILLSKPLKIPPFALTESSDSPQSIDPSPQPLLQELSDCFDLPPDYFQQ
LPRDLRLDLNDAAFDLSNGPVLDECGKELGELLLNLSRAWELGDTSTSQALASNLPMLES
SLTNNAKSAFGKRLVSAGRRFQSMGQYGQGELQKIAQTMITTGKLLSASSIPTETDEESK
KETKVFKFGELQVEITPQKANIGAVIGLVFGIVSWELAQGIQSIPESSLEYANDNALLLA
KSLRGALLALCYSSAFLSACTTVALFLLAISLSLSTSTMACSASDLAPLLSTTVNSTEAA
TYLCSQFSSIANQLSDATYAVNNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTN
VLDAAAGGLSYYLFGYAFSFGSPSNGFIGRHFFGLREFPSSQADYSFFLYQWAFAIAAAG
ITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSGDGWASAVKSDNNLLFGSGAIDFA
GSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVVLRGHSASLVVLGSFLLWFGWYGFNP
GSFLTILKSYGDSGGYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVLDVCNG
LLGGFAAITAGCSVVEPWAAIICGFVASWVLIGCNKLAEKLKYDDPLEAAQLHGGCGAWG
LLFTGLFAKEAFVNEVYPNKAGRPYGLFMGGGGKLLAAQIIEILVISGWVTMTMGPLFYG
LKKLNLLRISSEDEMAGMDLTRHGGFAYAYHDGDDQSGKPSSFTMRRVEPTDENTPHRDS
PPISA
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaagaaggagagatggtgacaccaggagaagtattaggcaaagcaacagagcta
aaagcaggaaaaggagcctacataggatcatatcgcgacactgatatacaatacgtcttc
tcttctctcactggtctccgccgcactctatctccttctcctgactctcctgaccagaga
ccaactgttgaagtaactggacacaaggcccatggtgctgttccggagcctggatctgtt
gtcattgccagagttactaaagtgatggcaaaaacagcttcggctgatattatgtgtgtt
ggtcctaagtctgtgcaagagaagtttactggcataattagacagcaagatgtaagagca
actgagattgacaaagtggatatgcatttatcatttcggcctggtgacattgtcagagct
cttgtcctatcacttggagatgcacgagcttattatctttcaactgcgaagaatgaatta
ggtgttgtgtctgcagagagcgcagctggtgcaacaatggttcccataagttggacagag
atgcaatgcccattgacaggccaaattgagcaaagaaaagtcgccaagaggaagtgcgat
cagaatttgcgactagtgaggacagcagtgatttttgtgtatggttcaagatatattgtt
ctgcttgagctttttatgctgtccgactcgaggtacagttaccaaaagaataagaaaaca
accttctgcttaggccgcatggatgaaggaatcaggcagtattccgtggagaaaggaaca
gaagaaataatatacaaggcaaacagaaacacaatgccttgtcttcccctcctccttcaa
ccactgccaactctctcttcttcatgtcctacccttctctttctccaaaatccacaccac
gtcccttctgtaacctctcttaaaaaacccaagaagattctcctctcaaaacctctcaaa
atcccaccttttgccctcacagaatcatcagactctcctcaatctattgacccttctcca
caacccctccttcaagagctctctgactgctttgatcttccgccagattatttccaacaa
ttaccacgtgatcttcgattagatttaaatgatgcagcttttgatctttcgaatggaccg
gttcttgatgagtgcggtaaagagctgggagaactcttgttaaatctctctcgagcatgg
gagctgggtgacacatcaacttcccaagctttagcgagcaatttgcctatgctggagagc
tctttaacaaacaatgctaaatcagcatttggcaaacgtttggtatctgctggaaggagg
ttccaatccatgggacagtatggtcagggtgaactgcaaaagattgcacaaacaatgatt
acaacgggaaagcttctttctgcaagttcaataccaacggaaactgatgaggaatcgaag
aaagaaacaaaagtcttcaagtttggagaactacaggttgaaataacaccacagaaagct
aatattggggctgtcattggacttgtatttgggattgtttcatgggaactagctcaaggc
attcaaagcattccagaaagttcattggagtatgcaaacgacaatgctttacttctggct
aagtctctaagaggagctctacttgccctttgctactcatcagcctttctgtctgcttgc
accactgtggcacttttcttacttgcaatctctctctctctctccacttccaccatggcc
tgctcagcctcagacctagctcctctcctctccaccactgtgaactccacagaagctgcc
acctacttatgctcccagttcagcagcatagcgaaccagctctcagacgcaacctatgca
gtcaacaacacttatctccttttctctgcctacctggtctttgctatgcaacttggcttt
gccatgctttgtgctggctctgtgagggccaagaacaccatgaacataatgctcactaat
gttcttgatgctgctgctggtggcctttcttactatctctttggctatgctttttccttc
ggctctcccagcaacggtttcattggccgccatttctttggtttgagagagtttccttct
tctcaagcagactatagtttcttcctttatcaatgggcttttgctatagctgctgctggc
atcactagcggctccatcgctgagagaacccaattcgttgcttacctcatatactcctcc
tttttaactggctttgtttacccggttgtttcccattggttctggtccggtgatggttgg
gccagtgcggttaaatctgataataatcttctattcggttcgggtgcaattgactttgcc
ggttccggtgtggttcacatggttggaggaatagctggtttgtggggtgctctcatcgaa
ggcccacgtattggccggtttgacaggagcggtcggtccgtggtattacgcggtcacagt
gcttcgctcgtggtgctcggttcgtttttgttgtggttcgggtggtacgggttcaacccc
ggttcgtttttgacaattttgaagagttatggtgatagtggagggtattacggtcagtgg
agtgctgtaggaaggacagctgtcactacaacactggccgggtgcacagcagcccttact
accttgtttggcaaaagattattagttggtcattggaatgtcctcgatgtttgcaatggt
ttattaggaggtttcgctgcaatcaccgcggggtgttcagtggtagaaccatgggctgca
atcatctgtggctttgttgcatcttgggttttaattgggtgtaataagctggcagaaaaa
ctaaagtatgacgacccattagaggcggcccaattgcacggcggatgcggcgcgtggggg
ctgctgttcacggggttgttcgcgaaggaggcgtttgtgaatgaggtgtatccgaacaag
gcggggcggccatacgggctgttcatgggtggtggtgggaagctattggcggcccagatt
atcgagatcctggtgatatccgggtgggtcacgatgacaatgggtccattgttctacggg
ctaaagaagctgaatttgttaaggatctcaagtgaggatgagatggcaggcatggatttg
acgaggcatggtgggtttgcttatgcatatcatgatggcgatgatcaatcagggaaacct
tcttcttttacgatgagaagagttgagcctactgatgaaaacacacctcatcgagactca
ccacccattagtgcgtga
DBGET
integrated database retrieval system
