Populus alba (white poplar): 118036796
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Entry
118036796 CDS
T07314
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
palz
Populus alba (white poplar)
Pathway
palz03420
Nucleotide excision repair
palz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118036796
09124 Replication and repair
03420 Nucleotide excision repair
118036796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
palz04121
]
118036796
03400 DNA repair and recombination proteins [BR:
palz03400
]
118036796
Ubiquitin system [BR:
palz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
118036796
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
118036796
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_VPS8
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
118036796
NCBI-ProteinID:
XP_034898522
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All DBs
Position
14:1352197..1356266
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AA seq
452 aa
AA seq
DB search
MWREIKDREAGKTRPNSFKNRVSSSRISNLQLSNYKDVVSPHRGSINSLQVDLTEGRYLL
SGASDASASVFDIQHATDFEGGGEGALIAKHKSLITIDKQHQNGHKFAISSAIWYPIDTG
LFVTGSYDHYIKVWDTNSTQMVINFKMPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDI
ASGAFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLG
RRPPVLARSAVSKVSTSKALSKGQNLLGKPRMPQKKSGGGNGIKHSPLGQVPAKGYLKQR
LHPGMLSSQDRATAHYGAVTGLKITEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETARL
QTSKPIQLATAQDSNLVFVPCMTSVKAFDVWSGKTYVTFRGHYEYVNCCWFSSQDQELYT
GGNDRQILVWSPARLISNEDASPAEDQDNWSD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtggagggaaatcaaagacagagaagcgggcaaaacccgccccaattcattcaagaac
cgggtcagttcctccaggatctctaatcttcaactctccaattacaaagacgttgtctcc
cctcacagaggttccatcaactctcttcaggttgatttgacagaggggagatacttatta
tccggggcatcagatgcatcagcttctgtttttgatattcaacatgccacggattttgaa
gggggaggagaaggagctcttattgccaagcacaagtctttaattactattgacaagcaa
catcaaaatggtcataaatttgccatatcttctgctatttggtatccaattgacacgggc
ctattcgttactggttcttatgatcattatattaaagtttgggatacaaattccacccag
atggttatcaatttcaaaatgcctggaaaggtgtatagaactgcaatgtctccgttggca
acttctcatatgttaatagccgctggaactgaagatgttcaagttcgactctgtgatatt
gcttcgggggcatttgcgcatacgctatctggtcatcgtgatggtgttatgacagtggaa
tggtctacttcaagtgaatgggttctggttactgggggatgtgatggtgccatacggttt
tgggatatcaggcgtgctggatgttttcttgttttggatcagtcccagtctcagcttggc
agacggccacctgtgcttgcacgatctgccgtgagtaaggtttcaacttcaaaggcacta
tctaaaggccaaaatctccttggaaaaccaaggatgcctcaaaagaaatctggtggtggg
aatggaataaagcattcacctcttggtcaagttccagccaagggatatctcaagcaacga
ttacatccagggatgttgtcaagtcaggatcgtgccactgcacattatggtgctgttact
ggtttaaaaataactgaagatggcatgtatcttctaagtgcaggatcagattcaagaata
aggttgtgggatgtcgaatcaggccgcaatacccttgtgaactttgaaactgcacgctta
caaactagcaagccaattcagttggccacagctcaggattcaaatctcgtttttgttcca
tgcatgacctctgtgaaagcatttgatgtttggtcgggtaagacgtatgtgacatttcgt
ggccattacgagtatgtgaactgttgctggtttagttctcaagatcaggaactgtacaca
ggtggcaatgatagacaaattctagtttggtccccggccagattgatttccaacgaggat
gctagtccagctgaggatcaagataactggagcgattga
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