Populus alba (white poplar): 118036947
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Entry
118036947 CDS
T07314
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118036947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118036947
03009 Ribosome biogenesis [BR:
palz03009
]
118036947
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118036947
Spliceosome [BR:
palz03041
]
Complex A
U1 snRNP components
U1 related factors
118036947
Complex B
118036947
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Pre-60S particles
Helicases
118036947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118036947
NCBI-ProteinID:
XP_034898712
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All DBs
Position
1:38619112..38625380
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AA seq
797 aa
AA seq
DB search
MAATVTASSAGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTLPKSVSSL
PVTSSVQVHQSSHRGYSPSVKEDDRYGRANNAGSKPDAVTRSISSSSQSARGAAIQSENV
PNGTANGLSARVYGSSAGGSGMSGEAYRRRHEITVTGDEVPPPLTSFEATGFPSEILKEV
LNAGFSAPTPIQAQSWPIALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRSCNDPRLGPTV
LVLSPTRELATQIQVEAVKFGKSSRFSCTCLYGGAPKGPQLKELDRGADIVVATPGRLND
ILEMRRISLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIA
ADLLVNPVQVNIGNVDELVANKSITQYVELLAPLEKHRRLEQILRSQESGSKIIIFCSTK
KMCDQLARNLTRQFGAAAIHGDKSQSERDYVLSQFRTGRSPILVATDVAARGLDIKDIRV
VINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKHASDLIKVLEGANQQVPPEIR
DMASRGGGGMGRFRRWGSGSGGHDGGRGGRSDFGFGGRGSWGMSNSGSSRPERGGGRGND
HELRDRYDRGYGDGHDKGHNHNRSPDKGSGWGDRSKSWNRDKSRSRSPDRHDRAPPVRSF
HQAMMEKGRASIPVQTQHERSRSPIAGGGGSSFHKAIMERGRASPPRQVHRERSRSPYHG
SGGSFHKEMIEQSRSSSYHAQQERGRSPSSGHDRGFNAGPRSYVGEEEEEGMIPADEDGM
IPPDDNGMFRGAVEKRH
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggccgctacagtgactgcatcttccgcgggtccgcggtatgcaccggaggacccgact
ctcccgaaaccatggagaggtttagttgatggtaaaaccggttacctttatttttggaat
ccagagaccaatgttactcagtatgagaggcctactctgccgaagtctgtttcgtcacta
cccgttacttcatctgttcaagttcaccagtcttctcatcgggggtacagtccctccgtt
aaggaagatgataggtatggaagagccaacaatgctggatcaaaaccagatgctgtaacc
aggagtattagcagtagtagtcagagtgcaagaggtgcagcaattcaatctgagaatgtc
ccaaatggaacagccaatggactctctgctcgggtatatggatcatcagctggaggaagt
ggtatgtctggagaggcttatcgccgccgccatgaaataactgtcactggtgatgaagtg
cccccacctctaacatcatttgaagctactggctttccttccgagattttaaaagaggta
ctcaatgcagggttctctgccccaactccaattcaggcacaatcatggccgatcgcattg
caaagtagagatatagtggccgttgccaagactggttcgggtaaaacactaggttaccta
ataccaggctttatccatctcaagcgcagctgtaatgaccctcgactgggtccaacagtg
ctggtactgtcaccaacaagagaactggctacacagatacaagttgaagctgtgaagttt
ggaaagtcatcaagattttcctgcacgtgcttgtatggaggagcgccaaagggtccccag
ttaaaagaactagacagaggagcagatattgtggttgccactcctggtcgcttgaatgac
attcttgaaatgaggagaattagcctcagtcaagtttcttaccttgtactagatgaggct
gatcgcatgttggacatgggttttgaaccccagatacgaaagattgtaaaggaagtgcct
gctcgtcgccagaccctcatgtacacagcaacttggccaaaggaagttagaaaaattgca
gcagatcttcttgtcaatcctgttcaggttaatatcggcaacgtagatgagcttgtggca
aacaagtcaatcacacagtatgttgaattattggcaccattggaaaaacatagacggtta
gagcagatattgcggtcacaagaatctggatcaaagattattattttttgctcaaccaag
aagatgtgtgatcaacttgctcgcaacctaacccgccaatttggagctgctgctattcat
ggtgacaaatctcagagtgagagggattatgttctgagtcagttccgaactgggaggtct
ccaatacttgtagctactgatgtagctgctcgaggactagacattaaagatatcagagtg
gttatcaattatgacttccctactggagtagaagattatgttcataggattgggagaact
gggagggcaggggccactggagtggcctacacattctttggtgaccaggatgcaaagcat
gcttcagatctcatcaaagttctggaaggagcaaatcagcaggtccctccagagatacga
gatatggcttcacgtggtggtggggggatgggaaggtttagacgttggggctctggctct
ggtggtcatgatggggggcgtggtggacgcagtgattttggttttggtggaaggggtagt
tggggaatgtccaactctggttctagcagaccagaaagaggtggaggccgtggaaatgac
catgagttgcgggacaggtatgatcggggatacggtgacgggcatgataaaggccacaat
cacaatcggagccctgacaagggatcaggttggggtgatcgcagtaaaagttggaaccgt
gataaaagccgtagtcggagcccggacaggcatgatagggctccaccagtgcgcagtttt
caccaggcaatgatggaaaagggtcgggcatccatccctgttcaaacccagcacgagagg
tctcggtcacctattgctggtggtggtggtagcagttttcacaaggcaataatggaaagg
ggtcgggcatcgccaccacgtcaagtccaccgtgagaggtctcgatccccttatcatggt
agtggtgggagtttccacaaggaaatgatcgaacaaagtcggtcatcctcttaccatgcc
cagcaggagcgggggagatcgccaagcagtggacatgatagaggatttaatgctgggcct
cgttcttatgttggagaagaagaggaggagggaatgattccagccgatgaagatggcatg
atacctccggatgataatggcatgtttcgaggagcagtggaaaaacgccactga
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