Populus alba (white poplar): 118037358
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Entry
118037358 CDS
T07314
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118037358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118037358
03012 Translation factors [BR:
palz03012
]
118037358
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118037358
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118037358
Translation factors [BR:
palz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118037358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
T2SSE
nSTAND3
ATPase
AAA_16
AAA_30
Myosin_head
Motif
Other DBs
NCBI-GeneID:
118037358
NCBI-ProteinID:
XP_034899212
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All DBs
Position
15:complement(9233261..9244297)
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AA seq
1202 aa
AA seq
DB search
MPCCIRMNTIMSLRPTSTKTAKSLHFHYKAKTTLKPSLFSSSSFVSVRNHQTLSLTNQPL
PRPLRFRHHGIFSFKCFVVADFHSKKLALPYTRSMQSFNYGRFAYRDVSSDESDYELGSS
QKEMTGSTLDNVDDWKWKLTMLLKSKDQQEVVSREKKDRRDFEHLSAMASRMGLHSRQYS
RVVVFSKVPLPNYRHDLDDKRPQREVILPFGLQREVDAHFKAYISKKPTSRGFFPPNSLS
RSNSGGSMDTDERIYERPELSVQNSVAMERILSRKSLQLRNQQEKWQESPEGQKMIEFRR
SLPAYKEKDVLLKAVSENQVIVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPR
RISAMAVSERVAAERGEKLGESVGYKVRLEGIRGRDTRLLFCTTGILLRRLLLDRNLKGV
THVIVDEIHERGMNEDFLLIVLRDLLPRRPELRLILMSATLNAELFSSYFGGAPTIHIPG
FTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKTWKMQKQAQAFKKRKSQIASSVEDAL
EVADFKGCSSRTQESLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKD
QLQAHPILGDPCRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVF
VVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQPGECYHLYPRCVYDAFAD
YQLPELLRTPLQSLSLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKLIGALDEHEN
LTVLGRHLSVLPVEPKLGKMLILGTIFNCLDPIMTVVAGLSVRDPFLIPFDKKDLAESAK
AQFAGRDCSDHLALVRAYNGWKDAERQQSGHEYCWKNFLSAQTLKAIDSLRKQFFYLLKD
TGLVDKQIENCNSRSIDEHLMRAVICAGLFPGMCSVVNKEKSITLKTMEDGQVLLYSNSV
NAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNIERGGLDGHLKMLGGYLE
FFMKPTLGDMYLSLKRELEELIQNKLLDPKLDIQSHNELLMAIRLLVSEDQCEGRFVFGR
QLPAPSKKAEKAKNVAGDGGDNSKNELQTLLARAGHESPTYKTKQLKNNQFRSTVFFNGL
DFAGQLCSSKKLAEKDAAAAALLWLKGETHSYSRNTDQFSVLLKKSKTTNPNRIPVRGGK
WN
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgccttgctgtatcagaatgaacacaatcatgtctctaagacccacttccaccaaaaca
gcaaaatctctccatttccattacaaagctaaaaccacccttaaaccctctttattttct
tcatcatcttttgtttccgttagaaaccaccaaaccctatctcttactaaccagccattg
ccccgccctcttcgattcaggcatcatgggattttttcattcaagtgttttgttgttgct
gattttcattccaagaaacttgctttgccatataccaggtctatgcagagctttaattat
ggcaggtttgcttaccgggatgtttctagtgatgaatccgattatgaattaggctcctcc
cagaaggaaatgactggctcgacccttgacaacgttgatgattggaaatggaagttaacc
atgcttcttaaaagtaaagatcagcaagaagttgtatccagggagaaaaaggacagacgt
gattttgagcatctatcagctatggcatcccgaatgggtttacacagccgtcaatattca
agagttgttgtgtttagtaaagtccccttgccaaattacagacatgatctggatgataag
cgtccacagagagaggtgatcttgccttttgggttacaaagagaagtagatgctcatttc
aaagcttacatttccaaaaagcccacgagcagaggattttttcctcctaattccttgtca
agatcaaacagtggtgggagtatggacaccgatgaaagaatctatgagcggccagaactg
tcagtacaaaatagtgttgccatggagagaattcttagtcggaagagtttgcagcttcgt
aatcaacaagaaaagtggcaggaatctcctgagggccaaaagatgattgaatttcgtaga
agccttcctgcatataaagaaaaggatgtgctgttaaaagctgtatctgaaaatcaggtt
attgttgtctctggtgaaactggttgtggtaaaaccacacaacttcctcaatacatacta
gaatctgagattgaagctgctcgcggagctgcatgtagtattatatgtacacagcctaga
agaatatcggctatggctgtttctgaaagagttgctgcagaacgaggggagaaactggga
gaatcagttggttataaagttcggcttgagggtataagaggaagggacactcgactttta
ttctgtacgactggcatattgttgaggagattacttctggacagaaatttaaaaggtgta
actcatgtcatcgttgatgagattcatgaacgtggaatgaatgaagatttccttcttatt
gtactgagagatctgcttcctcgtcgaccggagttgagattgattttgatgagtgcaacc
ttaaatgcggagcttttctcttcctactttggcggtgctccaacaattcatattcctggt
tttacatatcctgtccgtgcacattttttagagaatattcttgaaataacaggatatcgg
ctgactccttacaatcaaatcgacgattatggtcaagaaaagacgtggaaaatgcaaaaa
caagctcaagctttcaaaaagaggaagagccagattgcttcttctgttgaggatgccctt
gaagttgctgactttaaggggtgtagttcacgcactcaggagtctttatcttgttggaat
cctgactcaattggttttaacctcattgagcatgttctttgtcacatagttaagaaagag
agacctggtgctgtgctggtttttatgactggttgggatgacattaactctttaaaagat
cagctacaagctcatcctatcttgggtgatccttgcagagtattgttactggcctgccat
ggttccatggccagctctgagcagaggttaatatttgataaacccgaagatggagtgagg
aaaattgtcttagctacgaatatggctgagactagtattactatcaatgatgtggtattt
gtggttgattgtggaaaggcaaaggagacatcgtatgatgctttaaataatactccttgt
ttgcttccatcctggatctcaaaggctgctgcccggcaaagaaagggaagagctggtcgt
gttcaacctggcgagtgttatcatctttatcccagatgtgtttatgatgcatttgctgac
tatcaattaccagaacttttgaggacacctttacagtctttgagtttgcaaatcaaaagt
ctccaacttggaagtatatcagagttcctatcaagggccctgcagccaccagagcctcta
tcggttcaaaatgctgttgagtatttgaagttgattggggctttagatgagcatgaaaat
cttacagtgctaggacgtcatttgtcagtgcttccagttgagcctaagctcgggaaaatg
ctcatattggggaccattttcaactgcctagatccaataatgactgtcgttgctggtctc
agtgttagagatccattcttaataccatttgacaagaaggatcttgcagagtctgcaaaa
gcacaattcgctggtcgtgattgcagtgaccatcttgcacttgtccgggcctataatggt
tggaaagatgcagaaagacaacaatctggtcatgagtactgttggaagaattttctttct
gcacagactctaaaagccattgattccttaaggaaacaattcttttacttgctcaaggat
actggactggttgataagcagatagaaaattgcaattcaaggagcattgatgagcatctt
atgcgagcagtcatctgtgctggcctgttccctggaatgtgctctgttgtgaacaaggag
aagtcgataacactgaaaacaatggaggatggccaggtgcttctgtactcgaattctgtg
aatgctggggtgcccaaaattccatacccttggttagttttcaatgaaaaagtgaaagtg
aattcagtttttctccgtgattcaactggcgtttctgattccgtgctgcttttatttgga
ggaaacattgagaggggtggactagatgggcacctaaaaatgttgggaggatacttggaa
ttttttatgaaacccacattaggagatatgtatttaagcttaaaacgtgagcttgaggaa
ctgattcagaataaacttctagatcccaagttggatatacagtcccacaacgagcttctg
atggcaataagattgctggtttcagaggaccaatgtgagggtagatttgtatttggtcga
cagctgccagcaccctcaaagaaggcagaaaaggccaaaaatgttgctggtgatgggggt
gacaattctaagaatgagcttcaaactttacttgccagggcagggcatgaatcacccact
tataagacaaaacaactgaaaaacaaccagttccgttctactgttttctttaacgggctg
gactttgctgggcagctttgcagcagtaagaaacttgcagaaaaggatgcagctgctgca
gctctactgtggttgaagggggagacacattcatattccagaaatactgaccagttctcg
gtgcttctgaagaagagtaagaccacaaatccaaacagaatcccagttcgtggtggtaaa
tggaattag
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