Populus alba (white poplar): 118037662
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Entry
118037662 CDS
T07314
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118037662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118037662
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118037662
mRNA degradation factors
5'-3' decay
Decapping complex
118037662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_WDR75_2nd
Beta-prop_CAF1B_HIR1
PEP5_VPS11_N
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
DUF7717
SNN_linker
DUF445
Motif
Other DBs
NCBI-GeneID:
118037662
NCBI-ProteinID:
XP_034899601
LinkDB
All DBs
Position
1:54424781..54432807
Genome browser
AA seq
1381 aa
AA seq
DB search
MASPNPQHQQQQPQPQPPPFDMHKFFMHTSTPPPPQNPSSSPSPPPPNLIMIPPPQQIPS
SSYPSSTGTHHFPHYPNFPFPFPPQQQQFQPPYPLQQNPNPSNPPPLANPQRSLSYPTPP
ITPNQQLQDRSGAEIMALLRTPQNQEPPPIPPPAAPAQDFSGALSNSNNIFSGPIRMPSS
SSSKMPKGRRVTGENVVYDVDVRLQGEAQPQLEVTPITKYFSDPQLCLGRQIAVNRTYIC
YGLKQGNIRILNINTALRSLFRTHSQRVTDMAFFAEDVHLLASAGIDGRINVWKISEGSD
VEDKPQITVQNIIAVQIVGEGETKNPRVCWHCYKQEILVVGVGKRVLRIDTNKVGKGEVY
SSEAPLQCTVDKLIDGVQFVGKHDGEVTDLSMCQWMTTRLVSASMDGTIKIWEDHKASPL
VVLRPHDSQPVYSATFLTATDRPDHIILVTAGPQNREIKIWASASEEGWLLPNDSDSLNC
TQTLELKSSAEPRAEEAFFNQVVALSQMGLILLANAKRSAIYAVHLDYGPNPASTSMDYI
SEFTVTMPILSLTGTSDVVHGQSVAQVYCVQTQAIQQYTLELCQCLPPLMENVGSERSDS
SVLHGVPNADGYAALESHGRKYSDVLMSSTSVDVTTPQQDAPASNMDPRTIALSSSTSDA
DIVCVPSPPLPLRPRLSRGLAEFAVGGMFEPSPASSNQGFNQPAIDYSVDQQMDTICSNL
SNVPSLDGDSRNDEKKIVQDNSTTLNPPVTFKHPTHLITPSEILMGASSSEITNVNEGKS
EVDSNVQDVVVNNDVANAEVEVKTVGETIATRDDEFNLRGESKRPVFENKEKIFCSQASD
LGVEMTRECCALQPDKNIEESGQVDGDGISESLAPPSHAGGDEVHDSTKDVSGKVSESTV
STVVPLSTTPSTKGKKQKGKNSQASGSTSQSPRAFNSTDSLNEPVGANLLSVEGAFPRFL
AMQEAINQLVITQKEMNKQMSNMVAIPVSKECRRLETTLGRNIEKAIKANTDALWARFQE
ENAKNEKLLRDRTQQITSLILNFINKDLAAMLEKALKKELASVGQGVVRTISPVIEKTVS
SVIIESFQRGVGDKAVNQLEKSVNSKLEATVARQIQAQFQTSGKQALQDSLKAGLEASVI
PAFEMSCKAMFDQVDATFRKGMVEHTAATQQHFESAHSSLALTLRESINSASSLTKTLST
ELADSQRQLLAIATNSGATNPLATQPSNGPLASFHEKVETPLDPTKELKRLISEQKYEAA
FTIVLQRSDVAMVSWLCSQVDLQSIMAMSPPPLSQGVLLSLLQQLACDVSKETPRKLEWM
TAVAAAIQPTDQMIAYYARPIVEQVCEILNRLRSSAGVTGAEITSIRILTHVVNYLLVAC
K
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggcatccccaaatcctcaacatcaacagcaacaaccgcaaccacaacctcctcctttt
gacatgcacaagttcttcatgcacacatccacaccaccaccacctcaaaacccttcttcc
tccccttcccctcctcctcccaatctcatcatgattcctccaccccaacaaatcccttcc
tcttcttacccttcatccaccgggacccaccacttccctcactaccccaacttcccgttt
cccttcccaccccaacaacaacaatttcaacctccttaccctctccagcaaaaccctaac
cctagcaacccacctcctcttgctaacccccaacgttccctctcttatcccacaccccct
attaccccaaaccaacaactccaagaccgttctggtgccgaaatcatggcactcctccgc
acccctcaaaatcaagaacccccaccaatcccaccgcctgccgcgcctgcgcaagatttt
tctggagctcttagtaatagtaataatattttttcggggcctattaggatgcctagcagt
tctagtagcaagatgcccaagggaaggagggtaacgggtgaaaatgtagtgtacgatgtg
gatgttagattgcaaggagaggcgcaaccccagcttgaagttacgcctataactaagtac
ttttctgatcctcagctgtgtttaggaaggcaaattgctgttaataggacttatatttgt
tatgggttgaagcaagggaatattaggattcttaatattaataccgcgctgaggtcttta
tttcggactcattctcagagggtcactgatatggctttttttgccgaggatgttcatctt
ttggctagtgctggcatagatggccggatcaatgtctggaagatctctgaaggttcggat
gtggaagataagccacagattacagtacagaatattattgctgtccaaatagttggtgag
ggggaaactaaaaacccaagggtttgttggcattgctataaacaggaaatcttggttgtt
ggtgttggtaaacgagttctgagaattgacactaataaagttggaaagggcgaagtctat
tcatctgaggcacctcttcaatgtactgttgacaagctgattgatggggtccaattcgtt
ggtaaacatgatggagaagtcactgatttgtcaatgtgccaatggatgaccacccgtttg
gtatctgcttctatggatggcacgataaagatttgggaggatcacaaggcatcgcccctt
gtggttttgagaccgcacgatagccaacctgtttattcagccacgttcttgactgctact
gaccggccagatcacatcatacttgtcacagcagggcctcagaacagggaaattaagatt
tgggcctcagccagtgaagaaggctggctcctgcctaatgattctgattcgttgaattgc
acccagacattagagctgaagagttcagctgaacctcgagctgaggaggcattcttcaat
caagtagtagcgttgtctcaaatgggccttattttacttgcaaatgcaaagaggagtgct
atatatgctgtgcatttagattacggtcctaatccagcatcaaccagtatggactacata
tcagagtttactgtcactatgcctattttgagtctaactgggacaagtgatgttgtgcat
ggccaatctgttgctcaagtttattgcgtacagacacaggcaattcaacagtatactttg
gaattatgtcagtgcctgccacctttgatggaaaatgtgggttcagagaggtcagattct
agtgttttacatggtgtgcctaatgctgatggatatgctgccctggagtcacatggacgt
aaatattctgatgttcttatgagctccacatcagttgatgtgaccactccgcaacaagat
gctcctgcttcgaatatggaccccagaactattgctttgtcctcatcaactagtgatgct
gatatagtttgtgttccatcacctcctcttcctttgagacctagattatctagaggtctt
gctgagtttgctgttgggggaatgtttgagccaagtcctgcatccagcaaccaaggcttt
aatcaaccagctattgattattcagttgaccagcaaatggacacgatttgttcaaatttg
tccaatgtgccttccttggatggtgactcgaggaatgatgagaagaaaattgtacaagat
aattctaccactcttaatccgcctgttacatttaaacacccaactcatctaataacccct
tctgagattttaatgggtgcttcatcctctgaaattaccaatgttaatgagggcaagagc
gaggttgactcaaatgttcaagatgtggttgtaaataatgatgttgccaatgctgaggtg
gaagttaaaacagttggtgaaacaatagccactcgagatgacgaatttaatcttcgaggg
gaatccaaaaggcctgtttttgaaaacaaggaaaaaatattttgctcccaggcatcagat
cttggtgttgagatgactagagagtgttgtgcattacagccagacaaaaatattgaggaa
agtggacaagttgatggtgatggcattagcgagtctcttgccccaccttctcatgcaggt
ggggatgaagtccacgactcaacaaaagatgtatctgggaaagtttctgagtccactgtg
tcaacagttgttccactgtcaacaactccaagtacaaaagggaagaagcagaaggggaaa
aattctcaagcatcaggttcaacttctcaatctccacgtgcctttaattcaacagattct
ttgaacgaacctgttggggctaatctcctctccgtggagggtgcctttcctcggtttttg
gccatgcaggaggcaattaatcagctagtgatcacacaaaaggaaatgaataagcagatg
tcaaatatggttgcaattcctgtttctaaagaatgtagaagactagagaccactttgggg
cggaacattgagaaagccatcaaagccaatactgatgcattgtgggctcgatttcaagaa
gagaatgcaaagaatgagaagttattgcgagatcgcacacagcagataacaagtttgatc
ttgaattttatcaataaggacttggcagccatgttagagaaagcactgaagaaggaattg
gcttcagtcggacaaggtgtagttcgcacaatatctccagtcattgagaaaacagtatct
tctgttattattgagtctttccagagaggagttggtgacaaggcagtgaatcaactggag
aaatcagttaactcaaaactcgaggctactgttgccaggcaaatccaagctcagtttcaa
acttctggcaagcaagctctccaggattccttgaaggctggtctggaagcatcagtaatc
cctgcctttgagatgtcatgcaaagctatgtttgatcaagtagatgctacctttcggaaa
gggatggtcgagcatacagctgcaacccagcagcattttgaatctgcacattcttcattg
gcactcactttaagggagtccatcaactcagcatcatcattgacaaaaaccttgagtaca
gagttggctgatagtcaaagacagctgttagctattgcaacaaactcaggtgcaacaaat
ccgttggctacacaacctagcaatggacctttggctagcttccatgagaaggttgaaaca
cctttggatccaacaaaagagctaaaacgattaatatctgaacaaaaatacgaggcggca
ttcactatcgtgctacaaagaagtgatgtggccatggtatcctggctgtgtagtcaggtt
gatctgcagagtataatggccatgtctcctcctcctctaagccaaggagtgttactctct
cttctacagcaactagcctgtgatgtaagcaaagagactcctcgaaagcttgagtggatg
acagcggtggcggctgccatacagccaacagaccaaatgattgcttactatgcacggcct
attgtcgagcaagtctgtgagattttgaaccgtctaaggagctcagctggcgttactggc
gctgagatcacaagcatccgtattctcacgcatgtcgttaattacttgctggtggcctgt
aaatga
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integrated database retrieval system
