Populus alba (white poplar): 118037809
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Entry
118037809 CDS
T07314
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
palz
Populus alba (white poplar)
Pathway
palz03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
118037809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
palz04121
]
118037809
03036 Chromosome and associated proteins [BR:
palz03036
]
118037809
Ubiquitin system [BR:
palz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
118037809
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
118037809
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WDR55
Beta-prop_WDR41
ANAPC4_WD40
EIF3I
Beta-prop_Aladin
MIOS_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
118037809
NCBI-ProteinID:
XP_034899808
LinkDB
All DBs
Position
12:67899..70429
Genome browser
AA seq
340 aa
AA seq
DB search
MENSTQESHLRSENTVTYESPYPLYAMAISSTASRANQYQRIALGSFIEDYNNRIDIVSF
DPETLSIKTHQNLSVEHPYPPTKLMFSPSSLHKSNDLLASSGDYLRLWEVRDSASVEPLL
VLNNSKTSEFCSPLTSFDWNDIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVHDI
AWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPRPDTPLLRLAWNKQDLRYMATILMD
SNKVVILDIRSPTIPVAELERHMASVNAIAWAPQSCRHICSAGDDSQALIWELPTVAGPN
GIDPMSMCSATSEINQLRWSAALPDWIAIAFSNKMQLLKV
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcaacccaagaatcccatctaagatcagaaaacactgtaacctatgaatcc
ccataccctctctatgccatggcaatctcttcaaccgcatctcgcgcaaaccaataccag
cggattgccttaggtagcttcattgaagactacaacaaccgtatagacatcgtctctttt
gaccctgaaaccctctctatcaaaacccaccaaaatctctctgttgagcacccttatcca
cccacaaagctcatgtttagcccttcatctcttcacaagtccaatgacctcttagcctct
tctggtgactatcttcgattgtgggaagttagagactctgcttctgttgagcctcttttg
gtgcttaacaatagtaagacaagtgagttttgttcccctttaacttcttttgactggaat
gatattgaacctaagagaattggtacttgtagtattgatacaacttgtactatttgggat
attgaaaagggtgttgttgaaacacaacttatagctcatgataaagaggttcatgatatt
gcttggggagaagcaagggtttttgcttcagtttctgctgatgggtcagttaggattttt
gatttaagagataaggaacattctactattatatatgagagtcctagacctgatacaccc
ttgttgagattggcttggaacaaacaggatttgaggtatatggctacaatattgatggat
agtaataaagttgtgatcttggatattaggtctccaacaatccctgttgctgagttggag
aggcatatggcgagtgtgaatgctattgcttgggctccgcagagttgtaggcatatttgt
tctgctggtgatgattcacaggcactcatttgggagttacctactgtggctgggcctaat
gggattgatccaatgtctatgtgctccgctacttctgaaattaaccagcttcgatggtct
gctgcactgcctgattggattgctatcgcgttttcaaacaaaatgcagcttttaaaagtt
tga
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