Populus alba (white poplar): 118038603
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Entry
118038603 CDS
T07314
Name
(RefSeq) uncharacterized protein
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118038603
09122 Translation
03013 Nucleocytoplasmic transport
118038603
03015 mRNA surveillance pathway
118038603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118038603
03041 Spliceosome [BR:
palz03041
]
118038603
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118038603
Spliceosome [BR:
palz03041
]
Complex C
Other components
EJC/TREX
118038603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
118038603
NCBI-ProteinID:
XP_034900898
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All DBs
Position
5:6037168..6042153
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AA seq
774 aa
AA seq
DB search
MSSQYPVLGNKLDLVQLKVTELKEELKRRKLKTSGLKDDLVKRLEEAIRIEREDEEIRNE
LVNAVVAVGVDNGVDLENLHVVGVKNAEAVSAVTETVEVVVDDAANRDEKVGDVMVQAGI
DESVKAMGSRELQEEVKMGGVNSSRVEEEELTTHATTMETSISVTESVVSELALSVQDVQ
NSGTQEANENSSIQLENEDSKPQLENESSKPSDENVMLESSAPDNQVSEVNPNLGFQVNS
DSISTDSVSINEKIELKDNIIADDVKLELDDVKLEMVEPSSSNVVPVGGESHPMDVEEPQ
EKSPSVEKKDDSNGTNADMSKKNDSVDVGYSEKLNLDRSSGDDSMEEDVLESKQIDSKYN
TDEVGDKCKIKNELPSVKEENLVNVTGKDLSTDQKEIHVENRTCPVAPMEKRKLNDQEAV
GNTEPLKRQRRWNSESIKVPEQQSSNLTPTTTPNDGFQPTPFRRNFSRSESSVSEEAPKE
RIVPPSQKPPTNSLRIDRFLRPFTLKAVQELLGKTGSVTSFWMDHIKTHCYVMYSSVEEA
VETRNTVYNLQWPPNGGRLLVAEFVDPQEVKIRVDAPPQSPAAPVTPSTAAPAPSPPMLQ
PQPSPRQQVSRQQLPPPPSLPLPPPLSNPPHVRERVDLPPPPPLPEKHDPPIVTLDDLFR
KTKTAPRIYYLPLSEEQVAAKLAGHGKNTKQSAGVACRRELFQPSRGMWFVAGFGFSEDC
MMLKKLKVLLALETFQLRALYMSGSPDMWTYLVFLLNKNFNFPNLKQLALNSLH
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcacaatacccagttcttggaaataaactggacttagtccagttgaaggttact
gagttaaaagaagagcttaaaaggcggaaattgaaaaccagtggtttgaaggatgatttg
gttaaacggttggaagaagcaattcgtattgagagggaagatgaagaaattcgcaatgag
ctggtaaatgcagtggttgcagtgggtgtggataatggtgttgatttggagaacctgcat
gtagttggggtgaaaaatgcagaggcagtatcggctgttactgagacagttgaagttgtt
gtggatgatgctgctaacagagatgagaaggtgggtgatgttatggttcaggctggcatt
gatgagagtgtgaaagccatgggttcaagagaacttcaagaggaggtcaaaatgggtggc
gttaattcttctagggtagaagaagaggagctcactactcatgcaactaccatggagacc
agcatctctgttactgagagtgtggtatctgaattagcattaagtgtgcaagatgtgcaa
aattctggaacacaggaggcaaatgagaactcaagtatccagctggagaatgaagattca
aagccccagctggagaatgagagttcaaagccttcagacgagaatgtcatgcttgagtct
tctgctccggacaaccaggtatctgaggtcaaccctaatttagggtttcaagtaaactct
gattctatttctactgattctgtatcaattaatgaaaagattgaactaaaggataatata
attgctgatgatgtcaaattagaactagatgatgttaagctagagatggtggaaccatca
tccagtaatgtcgtcccagttggtggtgaatcacatccaatggatgttgaagagccacaa
gaaaagagtccctctgttgaaaagaaagatgacagcaatggtacaaatgcagatatgagc
aagaaaaatgacagtgttgatgtggggtactcggagaagttgaatttggacaggagttct
ggtgatgactccatggaggaagatgttctagagagtaagcaaattgattcaaagtataat
actgatgaagtgggagataagtgtaaaataaaaaatgaactgcccagtgtgaaggaggaa
aatctagttaatgttactgggaaggatttatctactgatcaaaaggagatccatgtcgag
aacaggacttgtccagttgcacccatggaaaaaagaaagcttaatgatcaagaagctgtt
ggaaacacagaacctttaaagcggcaacgaagatggaattctgagagcatcaaggttcct
gaacagcaaagctctaatcttacacccaccaccacaccaaatgatgggtttcaaccgact
cctttccgacgcaacttttctcgatctgagtcctctgttagtgaggaggcacccaaggag
cgcatcgttccaccatcacaaaaaccgcctacaaattctctcagaatcgatcgttttctg
cgtccttttactctgaaagctgtccaagaactcctgggcaaaaccgggagtgtcaccagt
ttttggatggatcatatcaaaacccattgctatgttatgtattcgtctgtggaagaagct
gtggagacacgaaatactgtttataacctacaatggccaccaaatggtggacgtctttta
gtggctgagtttgttgatcctcaggaagttaaaatccgggtggatgctcctcctcagtct
ccagctgcacctgtcactcctagtacggctgcacctgcaccctccccacccatgttgcag
ccacagccctctccccgtcaacaggtttctaggcagcagcttccacctccaccttccctt
ccacttccaccgccgctgtctaacccaccccatgtcagggaacgggtcgatcttcctcca
ccccctccacttcctgagaaacatgatcctccaattgtcaccctggatgacctctttcgg
aaaaccaaaacagctcctcggatctactatttaccattatcagaagagcaagtcgcagca
aaacttgcaggacatggcaaaaacaccaagcagtctgcaggtgttgcttgtaggagggaa
ttgttccagccaagcagaggaatgtggttcgttgctggatttggtttttctgaagactgc
atgatgttgaagaagcttaaggttttattagcattagaaacttttcaactaagagctctc
tatatgagtggatcgcccgacatgtggacatatcttgttttcctgttgaacaagaatttt
aactttcccaatcttaaacagttggctctaaattccttgcattga
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