Populus alba (white poplar): 118039041
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Entry
118039041 CDS
T07314
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118039041
03015 mRNA surveillance pathway
118039041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118039041
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118039041
5.6.2.5 RNA 5'-3' helicase
118039041
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118039041
mRNA cycle factors
Common to processing body (P body) and stress granule
118039041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
Helicase_RecD
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
118039041
NCBI-ProteinID:
XP_034901495
LinkDB
All DBs
Position
1:13607254..13620120
Genome browser
AA seq
1270 aa
AA seq
DB search
MDAQDNSLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVNWPTPSDSLAATSSSV
DPTSSDHRAAASNSDHHSDSPAASPAASKSAARGGANSGTQGVVEGLVASMGGLNFEETG
DDDGYDFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAK
HKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNW
DLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPG
VDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAY
FVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDM
NHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRSALPRRFGA
PGLPELNASQVLAVKNVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV
AVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDE
QGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATE
PECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYR
MHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS
YLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEV
ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQP
LWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFGSVA
SSSPNADRRNSRARGSYMPPAPPNGTHKPGAHPAGFPMPRVPIPPFHGDPPSQPYAIPTR
GAVHGPIGAVPQVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQGIGNIGSFNFSSLDNP
NSQPSVGSALSQPGYINNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADF
STQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGFSRFGSGNDFMSQDYMAHGSQGLFTQ
VGFNDPSQDDASQSHFGITNPNQLQSQGLMNSLYSQPFAHYNTQPVNLQAPQQQSQQGQG
TQNQKIHYNG
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggatgcccaagacaacagcctatacgaaacggcgtcgcagccagacacagcaacagac
gcctacaccttccttgaattcaacacacaaggcgaatccgattttgactaccccgaattc
cgctctccggtgaactggcccactccttccgactcgcttgccgccacatcctcctctgta
gaccctacctcatccgaccaccgtgccgccgcttccaattccgatcaccactctgattct
cctgctgcgtctcctgctgcgtcaaaatctgctgcgcgtggaggagcgaatagtgggacc
cagggggtggtggaggggttagtagcgagtatgggagggttgaattttgaagagacggga
gatgatgatgggtatgattttgggaaaggggattttacggagcacgcatgtaggtactgt
ggggtttcgaatcctgcgtgtgtagtgaggtgtaatgtgccgtcctgtagaaaatggttt
tgtaattcgagagggaatacctctggttcgcatattgttaatcatctggttcgagcaaag
cataaagaggtctgtctccataaagacagccctctgggagaaacaatacttgagtgctac
aactgtggttgccgaaatgtgtttcttcttggatttatatcagccaagacagaaagtgtt
gttgtcctcctctgtagggaaccttgcttgaatgttaatgcactgaaggacatgaactgg
gacctgagccagtggtgccccctaattgatgataggtgttttctacagtggctcgtgaag
atcccatctgaacaggagcagttgagggcacgccaaattagtgctcaacaaataaataaa
gtagaagaactttggaaaacaaatcctgatgccacccttgaagatcttgagaagcctggt
gttgatgatgaacctcagcctgtagcattgaagtatgaagatgcatatcagtatcaaaat
gtatttgctccacttattaagcttgaagctgactatgataaaatgatgaaagagtctcaa
agcaaggataatgtcactattcgatgggatattggccttaacaagaagcgtgttgcatat
tttgtatttcccaaggaggacaatgagttgcgccttgtacctggtgatgagttgcgactg
cgctattctggagatgcagctcatccagcatggcaatcagttgggcacgtgatcaagcta
actgcacaagaggaggttgcacttgagcttcgtgctagtcagggagttcctgttgatatg
aaccatggttttagtgttgattttgtttggaagagtacaagctttgaccggatgcaggga
gcaatgaaaacttttgcagtggatgaaaccagtgtcagtgggtatatataccatcacttg
ttgggccatgaggttgagaatcaaacagttcgcagtgcattgcctcgccgttttggtgca
cctggtctcccagagctgaatgcatcacaagttcttgctgtgaagaatgtcctccagaag
cctataagtttgattcaaggtccacctggaacaggaaaaactgtcacttctgccgccatt
gtatatcatatggctaaacagggacaaggacaggttttggtgtgtgccccaagtaatgta
gctgtggatcagctagctgagaagataagtgccaccggcttaaaggttgttaggctatgt
gcaaaatcaagggaagctgttagttctcctgttgagcatctcacccttcactatcaggtt
agacatctagacacttcagagaaaagtgaacttcacaagttgcaacagttgaaagatgaa
caaggagagctgtccagtagtgatgagaaaaaatacaaagctctgaaacgagcaacagaa
agggaaatttctcaaagtgctgatgtcatctgttgcacttgtgttggtgctggagatcct
cggttggcaaattttaggtttcgccaggtacttattgatgagtcaactcaggcgactgaa
ccagagtgtctcatccctttggtacttggggcgaagcaggtcgtttttgttggtgaccat
tgccagcttggacctgtcattatgtgcaagaaagctgctcgtgctgggttagcccagtct
ctctttgagcgccttgttttacttggtgtgaaaccaattagattgcaggttcaatatcgc
atgcacccatctctttctgaatttccatccaacagcttttatgaaggcactctgcaaaat
ggtgtgactgtcaatgagagacagtcatcaggcattgatttcccttggcctgtgccaaat
cgtccaatgttcttttatgtacagatgggacaagaagagataagtgccagtgggacatcc
tatctaaatcgtaccgaggctgcaaatgttgaaaaaattgtaactacgtttttgaggagc
ggtgtagtccctagccagattggagttataacaccttacgaaggacagagagcatatatt
gtgaattatatgtcaagaaacggtgccctcagacagcaactatacaaggaaattgaggtt
gcaagtgttgattcatttcaaggaagggaaaaggactacattattctgtcttgtgttagg
agcaacgaacatcagggcattggatttcttaatgatcctcggagattgaatgtagctcta
acccgtgctcgatatggtattgtcatcttgggaaaccctaaagttctaagtaagcagcct
ttgtggaatagcttattaactcactacaaggaacatgagtgcttggttgaaggacctttg
aataacttgaagcagagcatggttcaatttcaaaagcccaaaaagatttataacgatagg
aggcttttctttggtggtggacctggaattgtccctaatgataattttgggtctgttgcc
tcatctagcccaaatgctgatagaagaaactcccgtgccaggggatcttatatgccaccc
gccccacccaatggtacccacaagcctggtgctcatcctgctgggtttccaatgcctcgg
gtccccattccaccatttcatggtgatccaccttctcaaccatatgctattccaactcgt
ggagctgtgcatgggccaattggagctgttcctcaagtccctcagccaggaagtcgaggt
tttggtgctgggcgtggcaatgctggtgcacctattggaagtcatctccctcaccagcaa
ggcactcagcaaggcattgggaatattggatctttcaatttttcttccctggataatcca
aatagccagccatctgtgggtagtgcattatctcagcctggatacattaataatattcca
gttcagggatcgagccaaacatttcgtgatggattttccatggggggtatgtcccaggag
ttcttgggtgatgacttcaaaagccagggatcgcatgttccttacaatgttgctgatttc
tccactcaggcatctcaaagtggatatgctgtggattatgttacacaaggagcccaaggt
gggtttccaggcaacttcttgaatcagaattctcaagctggattttctcgttttggttct
ggaaatgatttcatgtctcaggattacatggctcatggatcacaagggctattcactcag
gttggctttaatgatccctcacaagatgatgcatcgcagagccactttggcataaccaat
ccgaaccaacttcaatctcagggcttgatgaattctctttactctcagccctttgctcac
tacaacactcagccggtgaacttacaggctccacagcagcagtctcagcagggtcagggc
acccaaaaccagaaaatccattacaacggttga
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integrated database retrieval system
