Populus alba (white poplar): 118039420
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Entry
118039420 CDS
T07314
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
KO
K08775
breast cancer 2 susceptibility protein
Organism
palz
Populus alba (white poplar)
Pathway
palz03440
Homologous recombination
palz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118039420
03460 Fanconi anemia pathway
118039420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
palz04121
]
118039420
03036 Chromosome and associated proteins [BR:
palz03036
]
118039420
03400 DNA repair and recombination proteins [BR:
palz03400
]
118039420
Ubiquitin system [BR:
palz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
118039420
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
118039420
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
118039420
FA (Fanconi anemia) pathway
Downstream FA components
118039420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
118039420
NCBI-ProteinID:
XP_034902001
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All DBs
Position
14:complement(22864460..22871436)
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AA seq
1181 aa
AA seq
DB search
MSSWKIFSDSGKNFRWEVTGQIIHTKPEPKQSGALIPPSSSKTHLPSMADLLLQGCPKLL
ENGNAPIFRTGSGKSVALKQSSIAKALSVLRDDDDAGEACVGENEFSFSKLRKKGNEDNG
NAPIFHTGSGKSVVLKQSSIAKALSVLGDDDGYSGNPSEVHGRNNERCFSNSLFHTGSGK
SVDISSAGLVRAKRLLGVEEENYSSNFQGFKCPRKSSTVNEQFGWRDVMHSGTKVSMKNN
GVIGDDLPAPRSSLVSKTVILESELTKEVNTNLLTPEIQKPPPIKFHTAGGRSLSVSSEA
LKRARSLLGDPDLGFFLNEGDAVDQGLSVFEDSGFGDASSTKENGFYSAFTHPRASSKHI
SKTFISPLKSSANHVQSSINPKNVISGSNLIKKFDAVHNDSICKVNNNATYVQKPVRNGL
CTSATMVANSLDNVTGSRMNSLQRTSSRMNPLQKSLCAPLLDISNTIGTAYSNNGQANGE
KRKLGRGISISPFKKPRSSKFTTPLNRNVSSVPSGLSTVSYESSSCRRKVSTRYPFQVPR
MYIKEYFGGHLSDKRLSEYFTNQVRQIKSNNADKYMFCDESGRDSIGAEAFYDMLLQSGA
LSQYASKEWVINHYKWIVWKLACYERCCPEKSSAKFLSVSNVLEELKYRYEREVNHGHRS
AIKRILEGDAPPSSMMVLCISSIYFGCEPKVEVPSVALNGAEHSNAAKLELTDGWYSVDA
LLDISLSMHLDAGKLFVGQKLRIWGAGLCGWAGPVSSFEASKTVSLSLHINGTYRAHWAD
RMGFCKGIGAPLAFRCIKSNGGPVPRVLVGVTRVYPVLYKDKLSNGSRTIVRSERMEAKL
VQLNNQRRSVIIEGIVSEFQRGMKSSNIYTDIDSEGAKIFKILETSAEPEVLMAEMSPQQ
LASFASYQSKLEATRQLDMEKAIGKALQDAGLGEREVTPFIRVRVVGLTNYQEKGAPKEG
LITIWNPTEKQKSDLVEGQAYAVAGLLPVSSDSNTLYLQARGSTTKWQPLSSLTMQQFQP
FFSPRVPVLLSNLGEVPLCREFDIAALVLHVGDIYTAAQQKKQWVFVTDSSISRFDSEDT
SKSLLAVSFCSPYMDNDSFTPINYNLAGSTIGLCNLINRAKDQTYHLSIAEATENSTYSL
SFDSSNFVHLKNAAASTQSWAKTSTSIINKLKERVLFIIGD
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtggaaaatattctccgactccggaaaaaatttccgatgggaagtcaccggc
caaatcatccacacgaaacccgaacctaaacaaagcggagccctaatccccccttccagc
tccaaaactcacctcccttccatggccgatctcttactccaaggatgtccgaaacttcta
gagaacggaaatgcaccgattttccgcacaggatcagggaaatcggttgcgttaaaacag
tcttcgattgcgaaagcgttatctgtcctcagagacgatgatgatgcaggtgaagcttgt
gtgggagagaatgaatttagtttttcgaagcttcgcaagaaagggaatgaagataatgga
aatgcaccaattttccatacaggatcagggaaatcggttgtactgaaacaatcttcgatt
gcaaaagcgttgtctgttcttggtgatgatgatggatattctggcaatccaagtgaagtg
catggtagaaataatgaacgttgtttctctaattctcttttccatactggatctgggaaa
tcagttgatatatcttctgctggtttggttagagcgaagaggttgttgggagtggaggaa
gaaaattatagttctaattttcaaggatttaaatgtccaaggaaatcttccactgtcaat
gagcaatttgggtggcgggatgtaatgcattcagggacgaaagtcagtatgaaaaataat
ggggttattggtgatgatttgccagctcctaggtcttctttagtttctaagactgttatt
ttagaaagtgaattgacgaaggaggtcaatacaaacttgttgacacctgaaatacaaaaa
ccacctccaattaaattccatactgccggtggaagatccctatctgtttccagtgaggca
ttgaaacgtgcaaggagtcttcttggtgacccagacctaggttttttcttaaatgaggga
gatgcagttgatcagggcctctcggtttttgaagatagtggatttggtgatgcttcatca
accaaggaaaatggtttttactctgcttttacccatcctagagcctcaagtaaacatatc
tcaaaaactttcatttcacctcttaaatcatctgcaaaccatgtccagtcatctattaat
ccaaaaaatgttatttcggggagtaacttgataaagaaatttgatgctgttcacaatgac
agcatctgcaaagttaataacaacgcgacttatgtacagaagcctgtaaggaatgggctc
tgtacatctgctacaatggttgctaattctctggataatgttactggctcaaggatgaat
tcacttcaaaggactagctccaggatgaatccacttcaaaagtcattgtgtgcgccattg
cttgatatttcaaatacaattggcacagcttactcaaataacggacaagctaatggagag
aagaggaaacttggaaggggaatttctatttctccatttaaaaagccccgcagttccaaa
ttcaccacccctttgaacaggaatgtctcatctgttcccagtggtttatctactgtatca
tatgaaagttccagctgtagaagaaaagtttccactagatatcctttccaggttcctaga
atgtatatcaaggaatactttggagggcatttatcagataagcgcctgtcggagtacttt
acaaatcaagtaagacagatcaagtcaaataatgcagataagtacatgttttgcgatgaa
tctggccgagatagcattggagctgaagcattctatgacatgttgcttcagtctggagct
ttgtcacaatatgcttctaaagagtgggttataaatcattacaagtggatagtttggaaa
cttgcatgttatgagagatgctgcccagaaaaatcttctgcaaaatttttgtcagtctcc
aatgtgcttgaggaattgaagtacagatacgagagagaagtaaatcatggccatcgatct
gcaattaagagaattctggaaggggacgcaccaccttcttcaatgatggttctatgtatc
tcttccatctacttcggttgtgaaccaaaggtagaggttccttcagtggcattaaacggg
gctgaacatagtaatgctgcaaaactggaactgaccgatgggtggtattcagtggatgcg
cttctggatatatcactttcaatgcatctggatgctgggaaactgtttgtgggacagaaa
cttcgaatatggggagcaggattatgtggttgggctggtcctgtgtcatccttcgaggca
tcgaagactgttagtttgtcattgcatataaatgggacttatagagctcactgggctgat
cgaatgggattctgtaagggaattggtgctcctttggcttttaggtgcatcaagagtaat
ggcggtcctgtccctcgggtgttagttggagtcacacgggtttaccctgttctatacaag
gataaattaagtaatggcagcagaactattgtgaggtcagagagaatggaggctaaactg
gtgcaattgaataaccagaggcgttcagttattatagagggtattgtttctgagtttcaa
agagggatgaaaagttctaacatttatactgatattgatagtgaaggagcaaaaatattt
aaaattcttgagacatcagctgaaccagaagtcctaatggcagagatgagtccacagcaa
ctagcatcatttgcctcttatcaatcaaaactagaggcgacaaggcaactggacatggag
aaagcaattgggaaagctttacaagatgctggcttaggggagagagaagtgaccccattt
attagggtcagggtagttgggttaacaaattatcaagaaaagggcgcccctaaagaaggc
ttaataacaatttggaacccgacagagaagcagaaaagtgatcttgtcgaggggcaggct
tatgctgtagcaggactgttacccgtgagttctgattcaaatacactttacttgcaagca
agaggatctacaaccaaatggcaacctttatcttccctgacaatgcaacagtttcagcca
tttttcagccctcgagtaccagtattattgtcaaatttgggtgaagttcctctttgtcgt
gaatttgacattgctgcacttgtgttgcacgtgggagatatttatacagctgctcagcaa
aagaaacagtgggtgtttgtgactgatagctccatttctagatttgattcagaagatacg
tcaaagtccttactggccgtcagcttctgctcaccatacatggataacgattcatttaca
ccaatcaactacaatcttgctggatccacaattggtttgtgtaatctcatcaatagagca
aaggaccaaacatatcatctctcaatagctgaagcaacagaaaattcgacctattctttg
agttttgattcctccaattttgtgcaccttaaaaatgctgctgcctctactcaaagctgg
gccaagacctctacctcgattattaataaactcaaggagagggttttatttattattggt
gattga
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