Populus alba (white poplar): 118041079
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Entry
118041079 CDS
T07314
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118041079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118041079
03009 Ribosome biogenesis [BR:
palz03009
]
118041079
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118041079
Spliceosome [BR:
palz03041
]
Complex A
U2 snRNP components
U2 related factors
118041079
Complex B
118041079
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
118041079
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
90S particles
Helicases
118041079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
ABC_tran
SRP54
AAA_30
Flavi_DEAD
T2SSE
PhoH
AAA_33
SLFN-g3_helicase
TsaE
AAA_7
Motif
Other DBs
NCBI-GeneID:
118041079
NCBI-ProteinID:
XP_034904090
LinkDB
All DBs
Position
Unknown
AA seq
729 aa
AA seq
DB search
MMGTERKRKVSLFDVVDEASVSAKLLKSNGAMNNNNNEGSSSINRWNGKPYSQRYYEILE
KRKNLPVWHQKEDFLQVLKKNQVLVLVGETGSGKTTQIPQFVLEAVELESSDRRRKMMIG
CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP
LLERYKVIILDEAHERTLATDVLFGLIKEVLKNRPDLKLVVMSATLEAEKFQGYFCEAPL
MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPHGDILVFLTGEEEIEDACRKIT
KEIGNLGDQVGPVKIVPLYSTLPPAMQQKIFEPAPPPLQEGGPSGRKIVVSTNIAETSLT
IDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERS
FNQDLQPQTFPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
DDEGNMTKLGEIMSEFPLDPQLSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKA
ADEAKARFGHIDGDHLTLLNVYHAFKQNNEDPSWCYENFINHRALKAADNVRQQLVRIMA
RFNLRLCSTDFNSRDYYINIRKAILAGYFMQVAHLERSGHYLTVKDNQAVHLHPSNCLDH
KPEWVIYNEYVLTSRNYIRTVLDIRGEWLVDIASHYYDLDNFPQCEAKRVLEKLYKKRER
EREDNKNRK
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtacagagaggaagaggaaggtgagtttgtttgacgtggtagatgaggcgtcg
gtctctgcaaagttgttgaaatcgaacggagcgatgaacaacaataacaatgaaggaagc
agctcgataaatcggtggaacgggaagccttactctcagagatactacgagatattagag
aagaggaagaatttgcctgtttggcatcagaaagaggattttttacaggttttgaagaaa
aatcaggttctcgtccttgttggtgagactggtagtggtaaaactactcagatccctcag
tttgttttggaagctgtcgaattagaatcttcagatagacgcaggaaaatgatgattggg
tgtacccagcctcgaagggttgctgcaatgtctgtttctaggcgtgttgctgaggagatg
gacgttactataggtgaagaggttggttatagcatccgttttgaagactgtagcagtgca
agaacagttttgaagtatctgactgatggtatgcttttaagagaggcaatgacagatccg
cttttggaaaggtacaaagtaataatacttgatgaggctcatgaaagaactctagcaaca
gatgtgctatttggacttattaaagaagtgctgaaaaataggcctgatctgaagctagtt
gtaatgagtgcaacactagaggctgagaaatttcagggttatttttgtgaagcacctctt
atgaaagttcctggcaggcttcatccggttgagattttctatacccaggagcctgagaga
gattacctagaggcagctattcggacagttgtccagatacacttgtgtgaaccccatggg
gacatacttgttttcctaactggtgaggaggagatagaagatgcttgccgaaaaataaca
aaagaaattggaaatttaggggaccaagtagggccagtgaaaatagtgcctctatattct
acgcttccaccggccatgcagcaaaaaatatttgaacctgctccacctccactacaggag
ggtggcccttctggaaggaagattgtggtgtcaacaaacattgcggaaacttctttgact
atagatggtattgtctatgttattgaccctggtttttctaaacaaaaggtttataaccca
cgagtgcgggttgaatctttgttagtttcccccatatcaaaggctagtgctcaccagaga
tcaggacgtgctggaagaactcaaccaggcaaatgttttagactctacacagagaggagt
ttcaatcaggatctccagccacagacctttccagaaatattgcggtcaaaccttgcaaat
acagttctaacattgaagaaattggggattgatgatctggtgcactttgatttcatggat
cctcctgcccctgagacattgatgcgagcattggaggtgttgaattatttgggggcattg
gatgatgaggggaacatgacaaaacttggggagatcatgagtgaatttcccttggatcct
caactgtcaaagatgctcgttgtgagtcctgaattcaactgttcgaatgaaattctttca
atttcggccatgctttcagtacccaattgctttgtccgccctagggaggctcaaaaggct
gccgatgaagcgaaggctaggtttgggcacattgatggggatcacctcacgctgttgaac
gtataccatgcatttaagcaaaacaatgaggatccatcctggtgctatgaaaattttatc
aatcatagggcattgaaggctgctgacaatgtaagacaacagcttgtccgtatcatggcc
aggtttaacctcaggttatgcagcactgacttcaacagccgcgactactacatcaacata
agaaaagctatattagccggatactttatgcaggttgctcaccttgaacgatctggacac
tatttgacagtgaaagacaaccaagcggtgcatttgcatccatcaaattgtttggatcac
aagccagagtgggttatttacaacgagtatgtcctaaccagcaggaattatattcggacc
gtgctagacattcgtggtgaatggttggtggacatagcatcacattactatgacttggat
aacttcccacaatgtgaggccaagcgggttcttgaaaagctttacaagaagcgggagagg
gagagggaggacaacaagaacagaaaatga
DBGET
integrated database retrieval system
