Populus alba (white poplar): 118041301
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Entry
118041301 CDS
T07314
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
palz
Populus alba (white poplar)
Pathway
palz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118041301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palz03400
]
118041301
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
118041301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
DNA-PKcs_N
Motif
Other DBs
NCBI-GeneID:
118041301
NCBI-ProteinID:
XP_034904470
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Position
14:complement(5520536..5526139)
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AA seq
682 aa
AA seq
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MARNKEGLVLLLDVGPTMYSVLPEIKKVCSMLIQKKLIYGKFDEVGVVVFGTQETDNELT
KEVGGYEHVVVLRNIKVVDGDLVDAFQELPRGNFDGDYLDAIVVGMDMLIKKYQATNKGK
KRLCLITNALCPIKDSCEGTKEDQVNTIAAQMSAHGMKMESVIVRGRLCGGGDQRIMAEN
DRLLNLFSEKTSARAVYVESPTALLGAVKTRNISPVTIFRGDLELGSKMKIKVWVYKKTS
EEKFPTLKKYSDKAPPSDRFATHEVKVDYEYKSVEDPNKVVPPEQRIKGYRYGPQVVPIS
SAEWDAVKFKPEKSVKLLGFTDASNIMRHYYMKDVNVFIPEPGNARAALAVSALARAMKE
MNKVAILRCVWRQGQGSVVVGVLTPNISEKDSTPDSFYFNVLPFAEDVREFQFPSFSSFP
ASWQPNEQQQEAADNLVKMLDLAPSAKQEALLPDFTPNPVLERFYRHLELKSKHPDAAVP
PLDETLKTITEADPDLLSEKKDVIDAFYNSFELKENPRLKKSSKRLLEKKRSGSDEDCQD
TTNALAVKPVKVEKIGDSSPVQDFEAMMSRRDSPDWVSKAIQDMKNKIYSLVENSYDGGN
HGKALECLLALRKGCILEQEPKQFNDFLHHLFNVSQEKKLRNFCESLIPRGLTLISKSEA
IDSEVTDDEARNFLVKKELKFE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacaaggaaggattggtgctgttactcgatgtcggtccaacaatgtacagt
gttcttcctgaaattaaaaaagtttgctccatgcttattcagaaaaagttgatttatgga
aaattcgacgaggttggagttgttgttttcgggactcaagagactgacaatgagctgacg
aaagaagtaggtgggtatgagcatgttgtcgtcttacgaaatatcaaagttgttgatgga
gatcttgttgatgcatttcaagagctccctcgaggaaactttgatggagattatcttgat
gctattgttgttggaatggatatgctgataaagaagtatcaagcaacaaacaaaggaaaa
aagcgtctgtgtcttattacaaatgcactgtgccctattaaagattcatgtgaagggacc
aaggaagatcaagtgaacactattgcggctcaaatgagtgcacatggaatgaaaatggaa
agtgttattgtgaggggaagattatgcgggggcggagaccagagaataatggctgaaaat
gatcgactgctgaatcttttttctgagaaaacatctgccagggcagtgtatgttgagagt
ccaactgcattgttaggtgcagttaaaactcgaaatatttctccagtaacaatattcaga
ggtgatcttgaacttgggtccaagatgaagattaaggtgtgggtctacaaaaaaacctca
gaggagaaatttcccactctgaagaaatattctgataaagcgcctccatctgacagattt
gcgacgcatgaagtcaaagtagattatgagtacaaaagtgtggaagatcctaataaggtt
gttcctccagaacaaagaattaagggttacagatatggaccacaagttgttccaatatca
tctgctgagtgggatgctgtcaaattcaaaccagaaaaaagcgtgaagcttctaggattt
actgatgcttcaaacataatgcggcactactacatgaaagatgtcaacgtctttattcct
gaaccaggcaatgcaagggctgctcttgcagtttctgctttagctagagcaatgaaggaa
atgaataaggttgcaattttgcgatgtgtctggagacaaggacaagggagtgttgttgtg
ggggttttgactcccaacatatctgagaaagacagcactcctgattcattttacttcaat
gtacttccttttgccgaggatgtccgggaatttcaatttccatctttcagcagttttcca
gcttcatggcagccgaatgagcagcagcaagaggccgcagataaccttgtaaagatgctt
gaccttgcaccatctgccaaacaggaagctctacttcctgatttcacaccaaatcctgtt
ctggagcggttttatcgtcatcttgaattaaagtcaaagcatccagatgcagctgtgcct
ccactggatgaaactctcaaaacaataactgaagctgatccagatcttctttctgaaaag
aaagatgtaattgatgcattttataatagctttgaactcaaggagaatccaaggctaaag
aaatcaagcaagcggttattggagaaaaaacgctctggttctgatgaggattgtcaagat
acaaccaatgctctagctgtcaagcctgttaaggttgaaaaaattggggattcaagtcca
gttcaagattttgaagcgatgatgtcacgcagagatagtccagattgggttagtaaagca
attcaggatatgaaaaataaaatatatagcctggttgagaattcctatgatgggggtaat
catggtaaagcattggaatgtctgcttgcccttcgcaaaggttgcatccttgagcaagaa
cctaaacagttcaatgatttccttcaccatcttttcaatgtcagccaagagaaaaagctc
cgcaatttctgtgaatccctcatacccagaggactcactttgatttcaaagtcagaagcc
atagacagtgaggttacagatgatgaagctagaaactttctggttaaaaaagagctgaaa
tttgagtaa
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