Populus alba (white poplar): 118041445
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Entry
118041445 CDS
T07314
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
palz
Populus alba (white poplar)
Pathway
palz03430
Mismatch repair
palz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118041445
03460 Fanconi anemia pathway
118041445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palz03400
]
118041445
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
118041445
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Fn3_VIN3
Motif
Other DBs
NCBI-GeneID:
118041445
NCBI-ProteinID:
XP_034904678
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Position
14:complement(9943172..9950023)
Genome browser
AA seq
915 aa
AA seq
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MESSAITIRPINKAAVHRICAGQVILDLSSAVKELVENSLDAGATSIEISLKDYGLESFQ
VIDNGCGVSPNNFKVLALKHHTSKLGDFHDLQSLTTFGFRGEALSSLCVLGDLTVETRTK
NESVATHLTFNHSGLLTAERKTARQVGTTVTVKKLFSSLPVRSKEFSRNIRKEYGKLISL
LNAYALISKGVRIVCSNTTGKNAKSVVLKTQGSDSLKDNIITVFGVNTFSCLEPVDIDIS
DSCKVEGFLSKSGQGSGRNLGDRQYYFVNGRPVDMPKVSKLVNELYKGANSRQYPIAIMN
FTIPTTACDVNVTPDKRKIFFSDEVSILLALREGLEMIYSSSNSCYSVNKFENHAKAADS
SQLCSPREKSNMLSKQSSANGNDSEETQTDAEDSSPLMTVEVKSKPFQVGERSIHDIEEK
FMMKDFALRLHGIKKTDNLTNSNSCKATTHLNTVPDQNAQCLSRVVERVKGDSNGPSGSF
QSKLSNFLTVNKRKREDITTQLSEVPVLRNQTSECQLKKSDIDMHDAVTSLPFNHHHIDD
STEFVDAEPPKHHSTDVIINKTRNNSGLQPKLGEDPLGEKNSSSPDDVPSITSPCKGLGN
LLEDLPVASPPTQSSIEILDVPVPFSAQQICSTLHFSFQDLHSRRMQRLSRLQSGNFTFG
GTKRSHRSYAAATLELSQPDNEERKLRALAAATTELERLFRKEDFGRMKVIGQFNLGFII
GKLDQDLFIVDQHAADEKYNFERLCQSTILNQQPLLRPLRLELSPEEEVVASMNLDIIRK
NGFALEEDPHALPGHHFKLKAVPFSKNITFGVEDVKDLISTLSDSQGECSIISRYKMDTA
DSVCPSRVHAMFASRACRSSIMIGDALGRNEMQKILEHLVDLKSPWNCPHGRPTMRHLID
MSSIYERPDETEASL
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggaatcttccgctatcactatcaggcctataaacaaagccgctgtccacagaatctgc
gctggtcaagtgatcttggacctctcatccgcagtcaaggagcttgttgaaaacagcttg
gatgctggcgctacttccatcgaaatctctttgaaagactacggtctggaatccttccag
gtcattgataatggctgcggcgtctctcctaataatttcaaggttctggcacttaagcac
cacacgtccaaattgggggactttcatgatcttcagtctttgaccacatttggtttcaga
ggagaggcattgagttcgctttgcgtgttaggagacctcaccgttgaaacaaggaccaaa
aacgagtcggtggctacacacttgacttttaatcattcaggtttgttaacagccgagaga
aagacagcccgacaggttggtacgacagtcactgttaagaagttgttttccagtttgccg
gtgcgaagcaaagaatttagccgcaacattcgcaaggaatacggaaagcttatttcttta
ttgaatgcctatgctcttatttcaaaaggcgttcgcatagtctgctctaacacaactggt
aaaaatgcaaagtctgtagtactaaaaacccaaggaagtgattcccttaaagataacatc
ataacagtgtttggtgtgaacaccttcagctgcttagagcctgtggatatagatatatca
gacagttgcaaggttgaaggcttcctttctaagtctggtcaaggcagtggtcgcaatttg
ggtgatagacaatactattttgtaaatggtcgaccagtggacatgcctaaagtcagcaag
cttgtgaatgaactatacaaaggtgcaaactcccgacaatatcccattgcaatcatgaat
ttcaccattccaactacagcgtgtgatgttaatgtaactcctgacaaaagaaaaatattc
ttttctgatgaggtttctatactgcttgctctaagggagggactggaaatgatttattct
tcaagtaattcctgttattctgttaataaatttgagaatcatgctaaggcagcagatagc
tctcagctgtgctctcctcgtgagaaatctaatatgttatcaaaacaatcatctgcaaat
ggcaatgacagtgaagaaactcaaacagatgcagaggacagcagtccactcatgacagtt
gaagtcaaatctaagccctttcaagttggagaaagatctatccatgacatcgaagaaaag
tttatgatgaaggactttgctcttagattacatggcattaagaaaactgataatcttaca
aacagtaacagctgcaaagcaacgacacatctcaatactgtgccggatcaaaatgcacaa
tgcctgtcaagagtggttgagcgagtaaagggggattcaaatggtccttctggctccttt
caatcaaaactcagcaattttttaactgtcaataagagaaagcgtgaagacattactaca
caattgtctgaagttcctgttctaagaaatcagacctctgaatgtcaattgaagaaaagt
gatattgacatgcatgatgcggttacaagccttccttttaatcatcaccacattgatgac
tctactgagtttgttgatgctgagccccccaaacatcacagcacagacgtgatcatcaat
aaaacaaggaataattcaggattgcagcctaaacttggggaggatccattaggtgagaaa
aattcatcttctcctgatgatgtcccatcaattacttccccttgcaaagggcttggaaat
ttgttagaggatcttcctgttgcctctcctccaactcaatcttccatcgaaatattagat
gttccagtgcctttttctgcccaacagatatgctccaccttgcactttagctttcaagac
ctgcattcaagaaggatgcagaggttgtcaaggttgcaatctggcaatttcacgtttgga
ggcacaaagagaagtcataggagctatgctgctgctacactggagctctcccaaccagac
aatgaggagcggaaattaagggctttagctgctgctacaactgagttagaaagactattc
agaaaagaagactttggtagaatgaaggtgattggtcaatttaatcttggttttatcatt
gggaaattagatcaggatttgtttatcgtggatcagcatgctgctgatgagaagtataat
tttgagagactctgtcaatcaacgattttaaaccagcagcccttgcttcggccactgagg
ctggagttatctccagaagaggaagtagttgcttcaatgaacctagacataatcagaaaa
aatggatttgctttggaagaggatccacatgcactacctgggcatcattttaaattgaaa
gctgttccttttagtaagaacataacttttggagttgaagatgtgaaggatctgatttct
actctatctgatagtcaaggggaatgctccataatcagtagatacaaaatggacactgct
gattccgtctgcccatcaagagttcatgcaatgttcgcatcacgtgcatgcagatcatcg
attatgattggagatgcactagggaggaatgaaatgcagaagatacttgagcatttggtc
gatctgaagtccccctggaattgcccccacggcagaccaaccatgcgccatttgattgac
atgtcatccatttacgaaaggccagatgaaacggaagcgagcttgtga
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