KEGG   Populus alba (white poplar): 118041615
Entry
118041615         CDS       T07314                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
palz  Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:palz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:palz03009]
    118041615
Ribosome biogenesis [BR:palz03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    118041615
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML WDR55 NBCH_WD40 EIF3I Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_IP5PC_F WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_WDR19_1st Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_WDR75_2nd PEP5_VPS11_N Beta-prop_LRRK2 WDR54 Beta-prop_DCAF12 WD_LRWD1 VPS11_N Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 118041615
NCBI-ProteinID: XP_034904945
LinkDB
Position
14:complement(6809537..6812615)
AA seq 451 aa
MNTKMEEEIVIASSSIDGGIGCWDLQTGTEHLRYKSCASPPHGLISVGRRFLASSQLQDP
KASSGAILYWSWSRPQVEVKCFPEEPIKPLVANSEGTYLVGGGLSGNIYFWEVATGRLLK
KWRAHYRAVTCLVFTEDDSLLVSGSEDGSVRVWPLLMIFDDYQMEQASQLYEHSFQEHTL
RVTDIVTGYGGGNAIIISASEDRTCKVWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAG
GRDGKIHIAALGADSSSIKSHWLHIIGSLSSHSKNVTCLAYSTNGNVLLSGSEDGMIRVW
DPKTHNIVRVFKHAKGPVNNIHVLKRPAYLNPRMLSNVQASSRRHGLSLPPPLSKYINTM
DEKVISAVVNLQATCNNPLDASSISSQVINCQIKELQQQGSAAAAEMEVEKLKLDCTQSM
QMLQRWKKTYDNLREFCVDELLEGGNVKSAN
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgaacaccaaaatggaagaagagattgtcatagcatcctcctcaatcgacggcggcata
ggttgctgggacctccaaacaggaaccgaacaccttcgctataaatcctgcgcctcccct
cctcacggccttatttcagttggccgccgcttcctcgcctcttcccagttacaggaccct
aaagcatcttcaggcgccatcctctactggtcctggtctaggcctcaggtggaggttaag
tgctttcctgaggagccaataaagccgcttgttgctaatagtgaaggcacttatcttgtt
ggaggtggtttatctgggaatatttacttttgggaggttgcgacaggtagattacttaag
aaatggcgtgcccactacagggctgtcacttgcttggtttttacagaagatgattctctt
ttggtttctggttctgaggatggatctgtccgagtttggccacttctcatgatatttgat
gattatcaaatggagcaggcaagccagctttacgaacatagctttcaagagcatactttg
cgcgtcactgatatagtaacaggttatggaggaggcaatgcaattataatttcagcttcc
gaggatcgaacgtgtaaggtgtggagtttatctaaggggatattattaagaaatatagtg
tttccctcaataattgattcaattacgttggaccctggtgaacatgtattctatgctggt
ggcagagatggtaaaatacacattgctgcgctcggtgctgatagctcatctatcaaaagt
cattggttgcatatcattggttcattatctagtcacagtaagaatgtaacttgcttagca
tatagtacaaatggaaatgtcttgctttctggatcagaagatggcatgattcgagtttgg
gacccaaaaacgcataacatagttcgggtgttcaagcatgcaaaaggtcctgtgaacaat
atccatgttcttaagcgaccagcttacttgaaccctcgaatgttatcaaatgtacaagct
tcttcaagaaggcatggattatcattaccacctccactcagtaaatatatcaatacaatg
gatgaaaaagtcattagtgcagtcgttaatctccaggctacttgcaataaccctctggat
gcttcatccatcagctctcaagtgattaattgtcaaatcaaagaactccagcaacaaggt
tcagctgctgcagctgaaatggaggtggagaagctaaagcttgattgcacgcaatcgatg
caaatgcttcagaggtggaagaaaacgtatgacaacttgcgtgaattttgcgtggacgag
cttttagaggggggtaatgtgaaaagtgcaaattag

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