Populus alba (white poplar): 118041681
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Entry
118041681 CDS
T07314
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118041681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118041681
03036 Chromosome and associated proteins [BR:
palz03036
]
118041681
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118041681
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118041681
mRNA degradation factors
5'-3' decay
Decapping complex
118041681
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118041681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
EPL1
Motif
Other DBs
NCBI-GeneID:
118041681
NCBI-ProteinID:
XP_034905043
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All DBs
Position
14:6339063..6346536
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AA seq
505 aa
AA seq
DB search
MNNNNRGRYPPGIGAGRGGGMNANPNFQSRVPQQQYVQRHFGQSHHQQQYNQHQQNHNQQ
QQQQQQQQHHQQQQWLRRSQLAAADSSVDEVEKTVQSEAVDSSSQDWKAKLKIPPADTRY
QTEDVTATKGNDFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTG
KTAAFCIPALEKIDQDNNFIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLK
DDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVLDEADKLLSPEFQPSIEQLIRF
LPSNRQILMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLN
TLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR
NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL
YRIEQELGTEIKQIPPHIDQAIYCQ
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaatagaggaaggtatccgccagggatcggcgccggtagaggcggaggt
atgaatgcgaaccctaattttcaatccagggtgccgcaacagcagtacgtgcaaagacat
tttgggcagagtcatcaccaacaacaatataatcaacatcaacagaatcacaatcagcag
cagcagcagcagcaacagcaacagcatcaccagcagcagcagtggttgagaaggagtcag
ctagctgctgccgattcgagcgttgacgaggtcgaaaagactgttcagtctgaggccgtt
gactcgagttcacaagattggaaggcaaagctaaagataccaccagctgacacgcgatac
caaaccgaggatgtgacagccacaaaagggaatgattttgaggattattttctgaagcgt
gagttgcttatgggaatatatgagaagggttttgaaagaccatctcctattcaggaagag
agcataccaattgctcttactggcagtgatattctagctagagcaaaaaatgggacaggg
aaaacagcagcattttgcatacctgccttggaaaagattgaccaagataacaattttatt
caagttgtgattcttgtgccaacacgtgagttggctcttcagacatcacaggtttgcaag
gagcttgggaagcatttgaaaattcaagtgatggccaccactggcggtactagtttaaaa
gatgacattatgcgtttatatcaaccagtccatttacttgttgggactccaggaagaata
ctagatcttgcaaaaaagggcgtgtgcattttgaaagattgttcaatgcttgttttggat
gaggctgataagcttttgtctccagagtttcaaccttcaatagagcagcttattcgtttt
cttccttcaaatcgtcagattttgatgttttcagctacatttcctgttactgttaaggac
ttcaaagatagatatctagagaagccttatgttatcaatcttatggatgaacttactctc
aagggtattacacaatattatgctttcgttgaagaacgacagaaagtccattgcttgaac
actcttttctctaagctgcaaataaaccaatcaatcatcttttgcaactcagtgaatcgg
gtagaattactggccaaaaagatcacagaacttggctattcctgtttttatatccatgca
aagatgttgcaagaccatcgtaacagagtatttcatgacttccgcaatggtgcatgcagg
aatcttgtctgcaccgatcttttcaccaggggtatagacatccaagcggtgaatgttgtt
ataaactttgactttcccaaaaactcagaaacataccttcacagggttggtcgatcagga
aggtttggacaccttggtttagctgtgaatttgatcacttatgaggaccgctttaacttg
tataggattgagcaggaacttggaactgaaattaaacaaattcctccacatattgatcag
gcaatatattgccaataa
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