Populus alba (white poplar): 118042007
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Entry
118042007 CDS
T07314
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118042007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118042007
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
118042007
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_17
TPR_CcmH_CycH
TPR_8
TPR_9
TPR_16
TPR_19
TPR_20
TPR_12
DUF2989
TPR_15
Motif
Other DBs
NCBI-GeneID:
118042007
NCBI-ProteinID:
XP_034905403
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Position
2:complement(169831..178853)
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AA seq
1186 aa
AA seq
DB search
MLKSGEEQEEDLEKQRAAVVELRELEKSVEANPDDPSLRFNLAVYLWERCECKEKAAEHF
VVAVKLNPQNATAFKYLGHYYYEKEKVRALKCYQRAVSLNPDDSQSGDALCDMLDQTGKE
TLELSLCTEASQKSPRAFWAFRRLGYIHLHHNRCSEAVHTLQHAIRGFLTSPDLWEALGL
AYQKLGMYTAATKSYGRAIELEDRRVFALIQSGNIFLTLGNFQKGVEQFQRALEISPQNV
SANYGLASGLLAWSKECMNMGAFRWGASLLEDACKVADKIAQLAGNFSCIWKLHGDIQLN
YAKCFPWMEDDQSVEYDVESFHASILTWKQTCYLASTSAKRSYQRALHLAPWQANLYIDI
GIASDLISSMNENHGYDQHPWQLSEKMVLGALLLEGDNYEFWVALGCLSGHNALRQHALI
RGLQLDVSLAVAWAYLGKLYREEGEKNLARLAFDCSRSIDPSLSLPWAGMSADCQIRELT
PEEAFESCSRAVQILPVAEFQIGLAKLALISGSLASSQVFGAIRQAVQKAPHYPETHNLH
GLVCEARSEYQAAITSFRLARCAINISSGDTSKSHFQKIAVNLARSLSKAGYAADAVQEC
ESLRKKGMLDSEGMQIHAFCLWQLGENDHALSVVRNLASSVSAMERALAAASVSFICRML
YYISGLDLAVSSILKMPKEFLQSTKVWIVASAIHALDHSNRLAQAVSSSHYSLLSHDEII
EKHYLTALAKLVKHGSDYCLGFQSGISHIKKALHSYPYSNLLRNLLGHLLLSCEEWKETH
VASRCCVTEAPNCASKQGLKSGCEILGAGAVACYAIGHEDPKFSYPACGYQCHNGPGAVQ
ELQKYMRQEPWNHRAQYLLILNLLQKAREERFPSKICAILERLILVALSNEFYSRESMSY
QYQKFQLLLCASEISLQGGNIAGCIKHAKNASSLLLPNNYLFFGHLLLCRAYAAVDDHTN
LQQQYIRCIELKTDYNIGWMCLKMIESLYNVESDSKISVLSLKECSKEWKNSWNMWIAVF
NFVLGLISLWKEEYFSAEESLAEACSLASSESCLFLCHGVACMKLARQFCSSDYLSLAVS
SLTSAHANSVIPLPLVSLLLAQAEGSLGSKRNWEKNLRFEWYSWPPEMRPAELFFQMHLL
SIQSEAGFKTPSTVEVCQSPLKWVLRAIHTNPSSLRYWNILHKLME
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaatcgggagaagaacaagaagaagatttagaaaagcaaagagctgcagttgtg
gagttgagagagttagagaagtcagtagaagccaatcctgatgacccctctcttcgattc
aaccttgcagtgtatttgtgggaaagatgcgaatgcaaggagaaggcagcagaacatttt
gttgtagcagtgaaactgaaccctcagaatgcaactgctttcaaatatctgggtcattat
tactacgagaaggagaaggtcagggctctcaaatgctaccagagggctgtctccctcaac
ccagacgattctcaaagcggagatgcactttgtgacatgttggaccagactggaaaggag
accctggagctctctctatgcactgaagcctctcaaaaatcacccagagccttttgggct
ttcaggagactgggttacattcacctccaccataatagatgctctgaagctgttcatact
cttcagcatgccattcgaggttttctcacctctcctgatttatgggaagctttgggtctt
gcctaccagaaacttggcatgtatactgctgctactaagtcttatggacgagccattgag
ttggaggataggagagtttttgctctcattcaaagtggaaatatcttcttgacgctcggg
aatttccaaaagggagttgagcagtttcagcgagctttggagatctcacctcaaaatgtg
tctgcaaactatgggctagcttctggactccttgcttggtcaaaggaatgtatgaatatg
ggtgcatttagatggggagcttcattgttagaggatgcatgcaaggttgccgataaaatt
gctcagctggctgggaatttttcatgtatctggaaattgcatggtgacattcagcttaac
tacgcaaagtgttttccatggatggaagatgatcagagtgtggaatatgatgttgagagt
ttccatgcttccatccttacctggaagcaaacttgctatttggcctccacatctgccaaa
aggtcgtaccaacgtgctctgcacttggctccatggcaagctaacctttatattgacatt
ggaattgcttcagatctcatttcttctatgaatgagaatcatgggtacgaccagcatcct
tggcagctatcggaaaagatggttctgggggccttgttacttgagggtgacaattacgag
ttctgggtggcactgggatgtttatctggtcataatgccttgagacagcatgccttgatc
aggggattgcaattggatgtctccttagctgttgcttgggcatatcttgggaagctttac
agagaagagggagagaagaacttggcaaggttggcatttgattgcagcagaagtatagat
ccttcactttcattgccatgggcaggcatgtcagctgattgtcaaattagggagttgaca
ccagaggaggctttcgagagctgttcacgagctgtgcagatacttcctgtcgcagagttc
caaattggtcttgctaaacttgctttgatttcagggagccttgcgtcttcacaggttttt
ggagccatccggcaggcagtccagaaagcccctcactatcccgaaactcataacttgcac
ggtctagtttgtgaggcacgatctgagtatcaagctgctattacttcgtttcgtctagca
cgctgtgcaatcaacatttcatcaggtgacacatcaaaatctcatttccaaaagatagca
gttaatttggcccgatctctgagtaaggctgggtatgctgctgatgctgtacaagaatgt
gaaagtttgagaaaaaaaggtatgcttgattcagaaggcatgcagatacatgctttctgt
ttatggcaacttggtgagaatgaccatgcgctctcagtggtaagaaatctggcttccagt
gtttcagcaatggaacgggcacttgcagcagcttctgttagttttatctgcagaatgctg
tattacatttctggactggatttggcagtttccagcattctgaaaatgccaaaagaattt
ctccagagtacaaaagtgtggattgtagcatctgccatccatgctcttgatcacagtaat
cggcttgcacaggctgtttcaagcagtcactattctcttttatcccatgatgagatcatt
gaaaagcactatttaacagctcttgctaagctggttaaacatggatcagattattgcctt
ggatttcagagtggaattagtcacattaaaaaagctcttcacagttacccctatagtaat
ttgctaaggaatctactcggtcatcttttgctatcatgtgaagaatggaaagaaactcat
gtagctagtaggtgctgtgtcacagaagctcctaactgtgcaagcaagcaaggtttaaag
tcaggatgtgaaattcttggtgctggggcagttgcttgctatgcaattggccatgaagat
ccaaaattttcttacccagcatgtggttatcaatgccataatggacctggagctgtccaa
gaacttcagaaatacatgcgccaagaaccttggaaccatagggctcaatacttgcttata
cttaatcttctacagaaggctcgggaagagagattccctagcaaaatttgtgccatactt
gagcgtttaattttggtggcgctttccaatgagttctattcaagagaaagcatgtcttat
caatatcaaaagtttcagcttttgctttgtgcttctgagatcagtttgcaaggtggaaat
atagcaggctgtatcaaacatgctaaaaatgcttcatcacttttgcttcctaataactac
ctgttttttggacacttgctgctatgtcgtgcctatgctgcagtggatgatcacacaaac
ctccagcaacagtatataagatgcatagaactgaagacagattataatatagggtggatg
tgtcttaaaatgattgaatctctgtataatgtggaaagcgattcaaaaatctcagtgttg
agcctcaaggaatgctcgaaagagtggaagaattcatggaatatgtggatagctgtattt
aattttgttctgggattaatatctttatggaaggaggagtacttttcagctgaagaatcc
cttgcggaagcttgttcgctggccagttctgagagctgcctttttctctgccatggtgtc
gcctgtatgaagcttgccagacagttttgtagctctgattacttatctcttgctgtaagt
agcctcaccagtgctcatgcgaattctgtcatccccttgcctcttgtatcgttactgtta
gcgcaagcagaagggagccttggttcaaagcgaaattgggagaagaacctccgctttgaa
tggtattcttggccaccagaaatgagacctgcagaactcttctttcaaatgcatttgctt
tcaatacaatcagaagctgggtttaaaactccatctacggtggaagtttgtcaaagccca
cttaaatgggttcttcgggcaatccatacaaatccgtcttctttgagatattggaacatc
ctgcataagcttatggaatga
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