Populus alba (white poplar): 118042556
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Entry
118042556 CDS
T07314
Name
(RefSeq) polyadenylate-binding protein 6
KO
K13126
polyadenylate-binding protein
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118042556
09123 Folding, sorting and degradation
03018 RNA degradation
118042556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118042556
03041 Spliceosome [BR:
palz03041
]
118042556
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118042556
mRNA cycle factors
Stress granule specific factors
118042556
Spliceosome [BR:
palz03041
]
Complex C
Other components
Complex C specific factors
118042556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_occluded
RBD_DEAH11
RRM_5
RRM_3
RRM_RdRP1_2
gpW
Motif
Other DBs
NCBI-GeneID:
118042556
NCBI-ProteinID:
XP_034906149
LinkDB
All DBs
Position
1:complement(20094423..20097862)
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AA seq
484 aa
AA seq
DB search
MTAAMASWKQQVLQRGASLYVGDLDPEVTETDLRAAFYHVCPISSLRLCRCRLTGKSLCY
AYVNLYSHAQASRALGLLNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSISSSC
LESIFSKYGTILSCKVAGENGRNKGFGFVQFESQDSALAAQTALHDTMLGGKKLHVCKFV
KKTERTAAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFV
NFKSPDDAKKAVDIMNGSVVGSKTLFVGKAQRKSERTMILKQEYKDLQIRIAEKLRASNL
YVKNLNVDIDDKKLKDVFSAYGKILSVKVICHNDGTSKQFGFVCFASPAEANKALVALNG
ALLEGKILHVAKAQWKKDHHQEWHNFSGQNQPQSFYPSNCTTVSSAIHPLHFNFDHSPLL
PFLHHPMFCQHFGVQHPFMAQNYQQNFSTHMPVAEVHLGSTLNTRDKSYQQHVCYYHSKT
FALT
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggcgatggcgtcgtggaagcaacaagtactacagaggggagcgtccctgtac
gtgggtgacttggacccggaagtaacagaaacggacttgagagctgcgttttaccatgtg
tgccccatttcctccctcagactgtgccgttgtcgtctcaccggaaagtctctctgttac
gcctatgtcaacttatactctcatgctcaagcatctagagctttgggtcttctaaatcac
actaacttgaagggaaaacccatgaggataatgtggtgtcagagggacccttttgcaaga
aagactggttttgccaatctatttgtaaagaatctagacttttcgatcagcagctcttgc
ttggagagcatctttagcaagtatgggacaatactttcttgcaaggtggctggagaaaac
ggaaggaataagggttttgggtttgttcagtttgagtctcaggattctgctctggctgct
caaacggctctccatgatactatgctgggtgggaagaaattgcatgtctgcaaatttgtc
aagaagactgaaaggacagcagcagcaccatgcgaagtgttcaccaatctttatgttaaa
aatctagatgaaacaataacagaggatggcctaaaggatatgttttctgtagttggtgat
gtttctagtgttgccatcatgatggatcacgaggggaaatcaaaacattttggattcgtc
aactttaagtctccagatgatgccaaaaaggctgttgatatcatgaatggttctgtagta
ggttcgaagactttgtttgtgggaaaggctcaaaggaaatctgaaagaacaatgatattg
aagcaagaatacaaggacttgcaaatcagaattgctgagaagttgagggcttcaaatctg
tatgttaagaacctgaatgtagacattgatgacaagaaattgaaagacgttttcagtgcc
tatgggaagattctttccgtgaaagtgatatgccataatgatggaactagcaaacaattt
ggttttgtatgttttgcaagccctgcagaagcaaacaaggctttggttgcactaaatgga
gccctccttgaaggaaagattcttcatgtggcaaaagctcagtggaaaaaggatcaccac
caggaatggcacaacttctctggacagaaccaacctcagtctttctatccttctaactgc
actactgtttcctcagcaatccacccgcttcatttcaattttgatcactctccacttctc
cctttcctccaccatccaatgttctgtcaacattttggtgttcagcatccttttatggca
caaaattaccagcagaatttttccacacatatgccagtggcggaagtgcatctagggagc
acgttgaacaccagagacaagtcctaccaacagcatgtatgctactatcattcaaaaaca
tttgcattaacatag
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