Populus alba (white poplar): 118043080
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Entry
118043080 CDS
T07314
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118043080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118043080
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118043080
Spliceosome [BR:
palz03041
]
Complex C
Other components
Step II factors
118043080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
Flavi_DEAD
AAA_24
AAA_30
T2SSE
nSTAND3
ResIII
AAA_16
AAA_7
ATPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
118043080
NCBI-ProteinID:
XP_034906799
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All DBs
Position
10:complement(16676921..16686406)
Genome browser
AA seq
1284 aa
AA seq
DB search
MDIDKSVVTMEAEQSNGSAGGLFVPKKEKLEFRPPERKSLLGLDVLAIAKRGGSDANGGG
FKAPKERATTSFMASIDEEEEATESSGLDEVENDGGSESGVRRNVNRRYRETSSSEKSAV
TREGSHSNTHGTSRSRENLSSDDCATYTGSSRSVRSRSPGSERDDRGRDRKGHKDDARDE
SRRGRDRHSSDREERYRGREARGRYEQEYDGDYGRKRSRYEGSRRTPGRSDWDDGRWEWE
ETPRQDSYNTSRRHHPSPSPMFVGASPDARLVSPWMGGQTPRSSGSAASPWDHISPSPVP
IRASGSSFRSSTSKYGGRSHQLTFSTTSAPSLEDGEGDKTYSSEEHNHEISESMRQEMEY
NSDRAWYDREEGNTMFDSDSSSFFLGDDASFQKKEAELAKRLVRRDGTKMSLAQSKKLSQ
LSADNAQWEDRQLMRSGTVRGTEVQTEFDDEEEHKVILLVHDTKPPFLDGRVVFTKQAEP
IMPLKDPTSDMAIISRKGSALVRETHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQID
ADTAAVGEEGEIDFKEDAKFAQHMKKGEAVSDFAKSKTLSEQRQYLPIYSVRDELLQVIR
ENQVIVVVGETGSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG
DKIGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFG
ILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILYSKSPCEDYVEG
AVKQAMTIHITSPPGDILIFMTGQDEIEAACHALAERMEQLTSSSKKAVPKLLILPIYSQ
LPADLQAKIFQNAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQ
VFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSL
KIENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLI
GEQLGCINEVLTIVSMLSVPSVFFRPKDRVEESDAAREKFFVPESDHLTLLNVYLQWKEH
QYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCGYDWDVVRKAICSAYFHNS
ARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATAVEPQWL
AELGPMFFSVKDSDTSMLEHKRKQKEEKTAMEEEMENLRKVQAETDRESKEKEREKRAKQ
QQQVSMPGLKKGSSTYLRPKKFGL
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atggatatagacaagtcagtggttacaatggaagcagagcagagcaatggtagtgccgga
ggcttatttgttcctaaaaaggagaaactcgaatttcggcctcctgaaagaaaatcactt
ttaggtttagatgttcttgcgattgcgaaacgaggaggatctgatgcaaatggaggagga
tttaaggctccaaaggaaagagcgacaacttcttttatggcgtcgattgatgaagaggaa
gaggctactgaatcttctggattagatgaagtagaaaacgacggtggaagtgagagtggt
gtacgcagaaatgtaaataggcgatatcgggaaacctcctctagcgagaaaagtgccgtg
acacgagagggatcgcatagtaacacacatggaacttctcgttctagagaaaacctgtca
tcagatgattgtgctacttatactgggagttcccggagtgttaggtctaggagtcctggg
agtgagagagatgaccgaggtagggacagaaaaggccataaagatgatgctagggatgaa
agcaggagggggagagataggcacagcagtgatcgtgaagaacggtatcgtggaagggaa
gcacgtggacggtatgaacaggagtatgatggagactatggaagaaaacgaagtcggtat
gaaggttcaaggaggacaccaggcaggtctgattgggatgatgggagatgggaatgggaa
gaaacacctcggcaggatagttataatactagccgacgccaccacccttccccatcgcca
atgtttgttggtgcctcacctgatgcacgattagtttccccatggatgggtggccaaaca
cctcgcagtagtggttcagctgcttctccttgggatcacatttctccctcgccagttcca
atacgtgcctctggatcatcatttaggtcttccacttctaaatatggtgggaggtcccat
caacttactttttccaccacaagtgcgccatcattggaggatggtgaaggagataaaact
tattcatccgaggagcacaatcatgagatttctgaaagtatgcgtcaagagatggaatac
aattctgaccgagcctggtatgatagagaagaaggcaatacaatgttcgattctgatagc
tcatcattcttccttggggatgatgcctcattccagaaaaaggaggcagagttggccaaa
agactggttcgaagagatggaactaaaatgtcacttgctcaaagcaaaaagttatctcag
cttagtgctgataatgcccagtgggaggatcggcaacttatgagatctgggacagttaga
ggtaccgaagtgcagactgagtttgatgatgaggaagagcacaaggttattcttcttgta
catgacacaaagcctcctttcctggatggaagagttgtttttaccaaacaagcggagcca
ataatgcccctaaaagatcccacctcagatatggccattatttcaaggaaaggatctgct
ctggtcagagaaactcatgagaagcaaagcatgaataagtcacgtcagcggttttgggag
cttgccggctcaaaactcggtgatattcttggtgtagagaaaactgctgagcagattgat
gctgacactgcagctgttggcgaggaaggtgaaattgattttaaggaagatgcaaaattt
gcacagcatatgaaaaagggggaagctgtaagtgattttgcaaagtcaaaaactctatcc
gagcagcggcaatatctacctatatattcagtgcgagatgagttgttgcaggtcattcgt
gaaaatcaagtgatagttgttgttggagagactggttcaggaaagacgactcaactgaca
cagtatctccatgaagatgggtatacaacaaatgggatagttggttgcacccaaccaagg
cgtgttgcagccatgagtgttgcaaaaagagttagcgaagagatggacactgaattgggg
gataaaataggttatgccattcgttttgaggatgtgactgggccaaatacaataattaag
tacatgactgatggagtgctcttgcgtgagacactgaaagattctgaccttgataagtat
cgtgtcattgtcatggatgaagcacatgagagatcattaagcacagacgtgttgtttggg
attttgaaaaaggtggttgcccagcgtcgtgacttcaaactcattgtgacatctgcaact
ctaaatgctcagaaattttcaaatttctttgggagtgtacctattttccacatccctggg
agaacatttccagtaaatatcttgtacagtaaaagtccttgtgaagattatgttgaaggt
gcagtgaagcaggccatgactatccacattaccagtcctcctggcgacattctcattttc
atgactggccaagacgagattgaggcggcctgtcatgctcttgcagagcgcatggaacag
cttacctcctcctccaagaaagcagtgcctaaactcttaatactacccatatactcccaa
cttccagctgatttacaagcgaagatattccaaaacgctgaagacggggcccgcaaatgc
attgttgccaccaacattgctgagacttctttgactgtagatggaattttttatgtcatt
gacacgggttatggaaaaatgaaagtttacaacccaaagatgggtatggatgctctccaa
gtttttcctgttagtcgtgctgccgcagatcagcgtgctgggcgtgctggtagaactggt
ccaggcacatgttataggctttatacagagagtgcttacctaaatgaaatgcttcccagt
ccagttccagagatccagcggacaaaccttggcaatgtggttttgttgctcaagtcgctt
aaaattgaaaatttgctggactttgatttcatggacccaccaccacaggacaacatcctt
aattctatgtaccagttgtgggtcttgggtgctctaaacaatgttggtgcccttactgat
cttggctggaaaatggtggagttcccattggatccccctctagctaagatgctcttgata
ggtgaacagttagggtgtataaatgaggttttgacaattgtgtcgatgctttcagtgcca
tcagtgtttttccggcccaaggatagagtggaggagagcgatgctgcaagagaaaagttc
tttgtgccagagtccgaccacttgactctgcttaatgtttacttgcagtggaaagagcac
cagtaccggggagattggtgtaatgatcattttttgcatgtcaaaggattacgaaaggct
agagaggttagatcccagctgctagacattctcaagacattaaaaatcccgctaacatcc
tgtgggtatgattgggacgttgtacggaaagccatctgctccgcatatttccacaattca
gcgagattaaagggtgtcggggagtatgttaattgccggaacggaatgccttgtcattta
cacccaagcagtgctctttatggtttaggctacactccagattatgtagtttatcatgaa
ttgatcttgacaacaaaggagtacatgcagtgcgccactgcagtggagccccagtggttg
gctgagctgggaccaatgtttttctctgtgaaagattcagacacatcaatgctggagcac
aagcgaaagcagaaagaagagaaaacagcaatggaagaggaaatggagaatttgagaaag
gtgcaagccgagacggacagagaaagcaaggagaaggaaagggagaagagggcaaagcag
cagcagcaagtctcaatgcctgggttgaagaaaggctcttccacatacttgagaccgaag
aagtttggtttgtaa
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