Populus alba (white poplar): 118043161
Help
Entry
118043161 CDS
T07314
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
palz03036
]
118043161
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118043161
microRNA pathway
RISC loading complex
118043161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Helicase_C
Dicer_dimer
Ribonucleas_3_3
ResIII
DEAD
PAZ
Cas3-like_C_2
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
118043161
NCBI-ProteinID:
XP_073267667
LinkDB
All DBs
Position
10:17290723..17301744
Genome browser
AA seq
1228 aa
AA seq
DB search
MMEPVSVDIDTTQQLLADPLPFARSYQLEALEKALKQNTIVFLETGSGKTLIATMLLRSY
AHLLRKPSRFIAVFLVPEVFLVRQQAGVVRMHTDLNVGMYWGDMGIDFWHAATWKREIDK
HEVLVMTHQILLNGLRQGYFKLDLIKVLIFDECHHARGNHPYACIMTEFYHRELMSGHHD
LPRIFGMTASLIKSKGANSESYYRQQICELENIMNSKVYTCASETVLAEFIPSPASEFLF
YEPMKIPDGIYAFLEEELGNLKAKHELLLKQLDLSELAAESVHNKISKVHSTLMFCSGEL
GVWLAFQAARFLSHRDTDSDFVAWGKVDVSGKTIVKNFCWDASLVISNCFSAECCIGDNT
EADVGAGLITAKVLCLIKTLLQYRDLKDIRCIVFVERVITAVVLESLLTELLPKHSGWKT
KYMTGNNSGLQSQTRQMQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPPSSV
SSFIQSGGRARMQNSDYLLMVEREDSTTHSRLENYLSSSEIMRRESLRRSATSCSAPQSE
LHEDEFYSVEGTGAVVTLSSSVSLINFYCSRLPSDGYFKPAPRFIIDKEKETCTLHLPKS
SPIPNICVQGNIKNLKQKAYLEACKQLHLIGALTDNLVPGIVVEEAAAQEDGNERYDDEQ
PIYLPPELASQGPRNLKTKYYCYLIELNQKYDYDVPVHDIVLVMRTELESDVLSSMGFEL
EVERGLLAVSLRYIGDIYLDQVPVLLCRIFQITLFEVLIHREVNRLEEVLKGLELETGVV
MDYFLLPAIRSRSQPSIDWEPISSVLFSYKNEDHFNCSSKGNAHVVHTKGGPVCTCVLQN
SLVCTPHNGEVYCITGASEHLNGRSVLKLRDGGASTYKEHFAKHSIQLRFDQEPLLEGRH
LFPVQNCLERCRTQKEKESKNARVDLPPELCDIILSPVSISTLYSYTFIPSIMHRLESLL
IAVNLKKMISDHCMQNVDIPAMKVLEAITTKKCQEKFHLESLETLGDSFLKYAASQQLFK
LYQNHHEGLLSKKKEKIISNAALCRRGCDRKLPGFIRNEVFDPKLWMVPGDKCGSDLLSE
ELLSESRKIYVRGRRKVGSKRVADVVEALIGAYLSTGGEVLALFFMDWIGIKVDFMIVPN
ERHFQLQAEKFVDVRYFESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVL
DYLITMHLYKEYPGMSPGLLTEVCFCKQ
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcctgttagcgtggatatagacacaacccaacagctccttgctgatcctctc
ccatttgctagaagttatcaattggaggctttggagaaggcgctaaagcagaacacaatt
gtctttttggagactggttctggcaagactttgattgcgaccatgctactgcgcagttac
gcccatcttcttcgcaagccttcacgttttattgctgttttcctggttcctgaagttttc
ctggttcgccaacaagctggagttgtgagaatgcataccgacttgaatgtgggcatgtac
tggggagacatgggaattgacttctggcatgctgctacatggaagcgggaaatagacaaa
catgaggtgcttgttatgacacatcaaattttgctgaacggcttgaggcagggctatttc
aaactagacttgataaaggtgttgatatttgatgaatgtcatcatgccaggggcaatcac
ccttatgcatgcatcatgacggagttctatcatcgtgagttaatgtctggtcaccatgat
cttcctaggatttttgggatgacagcttctctcataaagtcaaagggtgcaaactcagaa
tcatactacaggcagcagatttgtgaactggagaatattatgaattcaaaggtatacacc
tgtgctagtgagaccgtgcttgccgaatttataccatccccagcctcagaattcttattt
tatgagcccatgaagatccctgacggtatatatgctttcttggaagaagaattggggaat
ttaaaagcaaagcatgaattattgctcaagcaattagatctcagtgagcttgctgcagaa
tctgtacacaataaaatatcaaaagtacattcaactttgatgttttgttcaggggaactc
ggtgtttggttggctttccaggctgcacggttcttatcacaccgtgatactgatagtgac
tttgttgcatggggtaaagtagacgtgtctggcaagacaattgttaagaacttttgctgg
gatgcctctttggtgatttctaattgcttttcagctgaatgctgtattggtgataacact
gaggctgatgtgggtgcggggcttattactgcaaaagttctctgccttattaagacactt
cttcagtacagggatttaaaggacataagatgtatagtttttgtggaaagggttattact
gccgttgtccttgaatctctattgacggagttgcttcctaaacatagcggctggaagact
aaatacatgacaggaaataattcagggttgcaatcccagacacgccaaatgcaaaatgaa
attgtggaagaatttcgtaaaggcatggtgaacatcattgttgcaacatcaatccttgag
gaaggattagatgtacaaagttgcaacttggtgattagatttgatcctccatcctcagtc
agcagtttcatacagtccggaggtcgtgctaggatgcagaattcagactacttattaatg
gtggaaagagaggattcgaccacacattctcgactagagaactatctttctagcagtgaa
ataatgagaagggagtccctgcgccgctctgccacttcttgttcagctccgcagagtgaa
ctccatgaagatgagttctatagtgttgaaggcacaggggcagttgtaactcttagttca
agcgttagcttgattaacttttattgctcacgtcttccttctgatgggtattttaaacca
gctcctagatttattatagacaaggagaaggagacttgcacactacatcttccaaaaagc
tctcctataccaaatatttgtgtgcagggaaatattaaaaatctgaagcagaaggcatat
cttgaagcttgcaagcaactccatttaattggggctttaacagacaatcttgttcctggt
attgttgtggaagaagctgctgctcaagaagatgggaatgaacggtatgacgatgaacaa
cccatttatttgccacctgagctggccagtcaaggtccacggaacttgaagacaaagtac
tactgctacttaattgaattaaatcagaaatatgattatgatgttcctgtccatgatatt
gtgcttgtcatgaggactgagcttgaatctgatgtcttaagtagcatgggttttgaatta
gaagttgagaggggattattggcagtgagcttgaggtatattggagatatttatcttgat
caagtgccggttctcctatgtaggatttttcagattacgctttttgaagttcttatacat
cgtgaagtgaacagattggaagaggtcttaaaaggattggagctagagacaggtgttgtg
atggactattttctgcttccagctatcaggtcacgctcgcaaccttccattgactgggaa
cctattagttctgttctgttttcatataaaaacgaggaccacttcaactgttcttcgaag
ggcaatgcccatgttgtccataccaaaggcggtccagtttgcacatgtgtgcttcagaat
tccttggtctgcaccccccacaatggtgaagtctattgcatcactggtgcttctgagcat
ttgaatggaaggtcggttttaaagctgagggatggaggtgcaagcacctacaaggagcac
tttgcaaagcatagcatccaattgcgttttgatcaagaaccattacttgaagggagacat
ctttttccagtgcagaattgccttgaaagatgcagaacacaaaaggagaaagaatcgaag
aatgcacgtgtagatttgcctcctgaactttgtgacataattttatctccagtatcaatc
agcactctttattcttatacatttatcccatcaataatgcatcgattagagtccctgctt
attgctgtcaacttaaagaagatgatttcggatcattgcatgcaaaatgttgatattcca
gccatgaaggttttggaagcaattaccacaaagaagtgccaagagaaatttcatttggaa
tccttagaaactctcggagattcttttcttaaatatgctgcaagccagcagctatttaaa
ctttatcaaaatcatcatgagggccttcttagtaagaagaaggaaaaaattatttctaat
gctgcactctgtagacgtggatgtgaccgcaaacttccggggtttatccgcaatgaagtt
tttgatccaaaactctggatggttcctggtgacaagtgtggaagtgatttgttaagtgag
gagctgctttctgaaagcagaaaaatttacgtcaggggaagaagaaaggtgggaagtaag
agagttgctgatgttgtcgaggcactcattggggcataccttagtacaggtggtgaagta
cttgccttatttttcatggattggattggtataaaggtggatttcatgattgtaccgaac
gagaggcacttccaattgcaggcagagaagtttgttgatgttcgctactttgagtcactg
ttaaactattcatttcgtgacccttctctgttagtagaggcattgacccatggttcttac
atgcttcctgagatcccaagttgttatcagcgactggaatttcttggagacgctgtgcta
gattatctcatcacgatgcatttgtacaaggaatatcccgggatgtcaccaggactgtta
actgaggtctgcttctgtaaacaatga
DBGET
integrated database retrieval system
