Populus alba (white poplar): 118043251
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Entry
118043251 CDS
T07314
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118043251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118043251
03009 Ribosome biogenesis [BR:
palz03009
]
118043251
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118043251
Spliceosome [BR:
palz03041
]
Complex A
U1 snRNP components
U1 related factors
118043251
Complex B
118043251
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Pre-60S particles
Helicases
118043251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
118043251
NCBI-ProteinID:
XP_034907047
LinkDB
All DBs
Position
10:complement(15541390..15548451)
Genome browser
AA seq
1161 aa
AA seq
DB search
MATAEPASATVGPRYAPEDPTLPKPWTGLIDGSTGLLYYWNPETNITQYEKPPSVPPQLP
PALPPNASTPKLAQIPMAHSSQPNGLVAQAAQQTMQASQQQGQQISQLHQQYGQVTSQQQ
GPQVVQVSNQQGAPQQGSQLAQAIQQPGQLRSMQHPGQHLLSHAGQQMPQQGGQQVGQYI
MQHQSLQMPQPQGHQYAYQQPMQYMTYQQNVLPQGQQSSQQQAHPSAQGLQFPNQHEYKA
ALPKREEVEFQQGNQTGFSPTRFQQTGGSSSQNLSSAGNNPVCMPHSGVQLGQAQQFGSS
SVNIQHPPSMVQMQQIGTDFHQQHGPRFQNHMGPSVMHNQQSNLPPAGLNMGYENNARGR
SGNDHYINAKVEGPVMSPHQPEFTAMSRARKQQDSRTGSVPFQNVGPGHGGGFNADGHPN
HNMYSHATSGPPFPNNALMRPSFIETADISNLSPAEVYRQEHEVSATGDNVPAPFMTFEA
TGFPSEILRDIHSAGFVSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLQQ
RRNNAQNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKIPQLKELERGAD
IVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQTLMFT
ATWPKEVRKIASDLLVHPVQVNIGSVDVLAANKSITQYVEVVPQMEKDRRLEQILRTQER
GSKAIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWALNQFRSGKSPILVATDVA
ARGLDIKDIRIVINYDFPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAADLVKLLE
GANQHVPVEVREMALRGGPSIGKDRGGLNRFDAGRGGGRWASGGRGGMRDGGFGGRGGMR
DGGFGGRGGMRENSFGGRGGMRENSFGGRGGMRDGNFGGRGGRNDLFSGRENRGRGFGGS
GGGHAGWGRNDRGPNDRHSYMDGRGRGHGRFDGRRDMTDKSRDRSFSRSPDRARTRGYSR
SRSRSRSRSRSRSWTRSRSRSPRRSRSRSRSPRHSRSPRRSRSRSRSRIRSRSPQHAGSH
SRSPRRSPDYDRFERPRERNIDEKDMTVPELKASEQEMSPMSPGTHGNAFSGAELLPATG
SAEPVQQEATGDPGLPSVAEA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggctactgctgaaccagcttcagctaccgttgggccacggtatgctccagaagaccca
acacttcccaaaccatggacaggactgattgatggaagtacaggtcttttatattactgg
aatcctgaaaccaacatcacacagtatgaaaagcccccatctgtgccgccacagttgcct
cctgctctacctcctaatgcttctacgcctaagttggcccagatacccatggcacactca
tcacaaccaaatggcttggtggctcaagctgcacaacagactatgcaagcatcacagcaa
caagggcaacagattagccagttgcatcaacaatatggacaagtaacttcacaacagcag
ggtccccaagtagtgcaggtttctaaccagcagggtgcaccacagcaaggttcacagttg
gcacaggccattcaacaaccggggcagttgagatcaatgcagcatccaggtcagcatctg
ctgtcccatgcagggcagcaaatgcctcaacaaggaggtcagcaggtaggacagtacatt
atgcagcatcaaagcttgcaaatgccacaaccacaaggacatcagtatgcatatcagcag
ccaatgcagtacatgacatatcagcaaaacgtgcttccacaaggccaacaaagctcgcag
cagcaggcacatcctagtgcacaagggttgcaatttcctaatcaacatgaatacaaggca
gcgttgccgaagagagaggaagttgagttccagcaaggaaatcaaactgggttttctcca
actcggtttcaacagactggtggatcatcctctcaaaacctgtcttctgctggaaacaat
ccggtttgcatgccgcattctggtgttcagttgggtcaggctcaacagtttggtagctct
tctgttaatattcaacatcctccttccatggttcagatgcagcaaattgggactgatttt
catcagcagcatggtcctaggtttcaaaatcatatgggtccctcagtgatgcacaatcag
cagtctaatctgccccctgctgggttaaatatgggttatgagaacaatgcacgtggtagg
tctggcaatgatcattatattaatgctaaagtggaagggcctgtgatgagtccccatcag
cctgagttcacagctatgtctagggcaagaaagcagcaggattcaaggacagggagcgtc
ccatttcagaatgtcggacctggtcatggtggcggatttaatgcagatgggcatcccaac
cataatatgtatagtcatgcaaccagtggtccaccttttccaaacaatgcattgatgaga
ccctctttcatcgaaactgcagacatttctaacctctcgcctgctgaagtttaccgccag
gagcatgaagtctcagctacgggtgacaatgttcctgccccattcatgacttttgaagcc
actggtttcccttcggagatattacgagatatacattccgctggattcgtatctccgaca
ccaattcaagcacaaacatggccaattgcgctacaaagtagggatattgtggccattgcc
aaaactggttctggtaaaacattgggctacttgattcctgccttcattcttcttcaacag
cgacgaaataatgctcagaatggacctacagtgttagtcttggctccaaccagggagctt
gccacgcaaatacaagatgaggtgatgaaatttggtcgatcttctagggtctcttgcacg
tgcttgtatggtggagctccaaagattcctcaactgaaagaattagaaaggggagcagat
atagttgtggcaacacctggtcgactcaatgacatccttgaaatgaaaaggattgacttt
aggcaagtttcactccttgtgcttgatgaggctgatcgaatgcttgacatgggatttgag
cctcagatccgtaagattgtgaacgaaatacctcctcaaaggcaaacacttatgttcact
gcaacctggccaaaagaagtgaggaaaatagcaagtgatcttcttgttcatcctgtccag
gtgaacattggcagtgttgatgtgcttgctgccaacaagtcaatcacacagtatgttgaa
gtggtcccacaaatggaaaaggatcggcgcttggagcaaatccttagaacacaagagaga
ggttccaaggctatcattttctgctctacaaagagattgtgtgaccagcttgcacggagt
attggacggaattttggagccgctgcaatccatggagacaagtctcaaggtgagagagac
tgggctttaaaccaattccggagtggaaaatctccaattttagttgccactgacgttgct
gcccgtggtcttgatatcaaagacataaggattgttatcaactacgacttcccctctggg
attgaggactatgttcatcgaattggtagaactgggagggctggtgcaactggggtgtca
tacacctttttctctgagcaggactggaaatatgcagctgacctggttaaactgctggag
ggagctaatcagcatgtgcctgtagaggtgcgagagatggcgttgcgtggcggacctagc
attgggaaggatcgaggagggttgaaccgttttgatgctggcaggggtggtgggcggtgg
gcttctggtggccgtggtgggatgagagatggtggctttggtggtcgtggtgggatgaga
gatggtggctttggtggccgtggtgggatgcgggaaaacagctttgggggacgtggtggc
atgagggaaaacagctttgggggacgtggtgggatgagggatgggaactttggtggacgt
ggtgggagaaacgacttgttttctgggagggaaaacagaggaaggggatttggtggctct
ggtggtggtcatgcaggttggggtaggaatgatcgaggcccaaatgatcgtcatagttac
atggatggccgtggacgtggtcatggaagattcgatggtagaagggatatgactgataag
agcagggacagaagtttcagtagaagccctgatagggctcgaacacggggttatagccgg
agccggagccggagtcgtagccgtagtaggagtcggagctggaccagaagccgcagccgc
agccctcgacgcagccgcagccgcagccgaagcccgcgacacagccgcagcccccgacgc
agccgcagccgcagccgcagccgcatccgcagccgtagtcctcaacatgccggtagtcac
agccgtagccctcgaaggagccccgactatgatagatttgaaaggcctcgagaaagaaac
attgatgagaaggatatgacagttccagaattgaaagcttcagaacaagaaatgtctcca
atgtcgcctggcacacatggtaatgcattttctggagcagagctgctgccagccactggg
agtgctgagccagtgcaacaggaggctacaggagatccagggcttccttcagttgccgaa
gcttaa
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integrated database retrieval system
