Populus alba (white poplar): 118043735
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Entry
118043735 CDS
T07314
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118043735
03041 Spliceosome [BR:
palz03041
]
118043735
03036 Chromosome and associated proteins [BR:
palz03036
]
118043735
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118043735
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118043735
mRNA cycle factors
Common to processing body (P body) and stress granule
118043735
Spliceosome [BR:
palz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118043735
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118043735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118043735
NCBI-ProteinID:
XP_034907692
LinkDB
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Position
6:complement(18211180..18215800)
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AA seq
615 aa
AA seq
DB search
MRTSWADSVANSASENAESGSSGPRPTRATYIPPHLRNRPPSSDFLAPPPAAPSLGNDRV
GYGGPAGGSRWGGGGGSASKLDSGRLGYGSGGRGGGGGWNNRIGGLERGREREVNPFDND
GDAEPAFDVQENTGINFDAYEDIPVETSGKNVPPPVNTFAEIDLGEAVNQNIRRCKYVKP
TPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIAGIMREQYVQRPHGGRTVYPLALI
LSPTRELSCQIHDEAKKFAYQTGVKVVVVYGGAPINQQLRELERGVDVLVATPGRLVDLV
ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPCGRRQTMLFSATFPKEIQR
LASDFLSNYIFLAVGRVGSSTDLIVQRVEYVHETDKRSHLMDLLHAQRETEVNGKHSLTL
VFVETKKGADSLEHWLYVNKFPATSIHGDRSQQEREMALRSFKSGKTPILVATDVAARGL
DIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNLSLARPLADLMQESNQ
EVPAWLTRYASRVSFSGGKNRRSVGARFGGRDMRRDGSFNRGTDYYGGGNNSSGGYGVSA
GYGGGYNPTVASAWD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttcatgggcagattctgtggctaactctgcatctgagaatgcagaatctggt
tcgtctggtccgcgtcctactcgtgccacttacattccgccacaccttcgtaaccggcca
ccatcttctgatttcctggcgccaccacctgctgctccgtcattaggaaatgatcgtgta
ggttatggcgggcctgcaggtggttctcgatggggtggcggtggcggcagtgcttcgaaa
ctggattctgggcgcttaggttatggttctggtggtagaggaggtggtggtggttggaat
aatagaattggtgggctggaacgtgggagggagcgtgaggtgaatccatttgataatgat
ggtgatgcagagccggcttttgacgtgcaagagaatacaggaattaactttgatgcgtat
gaggatattcctgtggagacgagtgggaaaaatgtgccaccacctgtgaatacctttgca
gagatagacctgggtgaggcagtgaatcagaatattcggagatgcaagtatgtgaaacca
actccagtgcagcgcaatgcaatcccaatattgcttgctgggagggacctgatggcttgt
gctcagacagggtcagggaagacagctgccttttgctttccaataattgctggaattatg
cgggagcagtatgtgcagagaccacatggagggaggacagtgtacccactggctctcatt
ctttctcctacaagggagctttcgtgtcagatacacgatgaagccaaaaaattcgcctat
caaactggtgtcaaggtggtggtagtttatggaggtgctccaatcaaccaacagttgcga
gaacttgagagaggggttgatgttctagtggcaactcctggacggttagtggatttggtt
gagagggctagagtgtcattgcagatgatcagatatttagcacttgatgaggcagacagg
atgctggatatgggatttgaacctcagattagaaagatagtggaacaaatggacatgccc
ccatgtggcaggagacagacaatgctgttcagtgccacctttcctaaagaaatacagaga
cttgcttctgattttctttcaaattacatatttttggctgtcggaagggtcggttcgagt
actgatttaattgttcaaagagttgaatatgttcatgagactgacaagagaagtcatctc
atggaccttcttcatgctcagagagaaactgaagttaatggcaagcattctctgacatta
gtttttgtggagacaaagaagggagccgactcattggaacattggctgtatgtcaataaa
tttcctgctacatcaattcatggagatagatcacaacaggaaagagaaatggcacttaga
tcattcaagagtgggaagacgccaattctagttgcgacagatgtggcagcaaggggtctt
gatataccccatgtggctcatgtggtgaattttgatcttccaaatgacattgatgattat
gttcaccggatagggcgaacagggcgagctggaaaaacaggtctggctacagcatttttt
aatgagaataatttgtcattagcaagaccactagctgatcttatgcaagaatcaaatcaa
gaagtgcctgcctggctcacccgttatgcttcacgggtttcatttagtggtggcaagaat
cggcgctctgtgggagcccgttttggtggccgtgatatgagaagggatggctcttttaac
aggggtacagattattatggtggaggaaacaatagtagcggtggatatggggtttctgct
ggttatggtgggggttacaatccaactgtagccagtgcttgggattag
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