Populus alba (white poplar): 118044221
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Entry
118044221 CDS
T07314
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118044221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118044221
03009 Ribosome biogenesis [BR:
palz03009
]
118044221
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118044221
Spliceosome [BR:
palz03041
]
Complex A
U1 snRNP components
U1 related factors
118044221
Complex B
118044221
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
Pre-60S particles
Helicases
118044221
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6506
SWI2_SNF2
Cas3-like_C_2
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
118044221
NCBI-ProteinID:
XP_034908318
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All DBs
Position
19:22218870..22225113
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AA seq
557 aa
AA seq
DB search
MSYIPPHLRNSSSTTTVTTRRTQSPPLTDTNLSHSSSNSTSSATSSSSTFNSLSFRTSAS
VARTISVPQPVFPQWTPSDRVLRFTPDQIEEIRSQLKINVSVASGSPPAPAPIESFEDMC
LHQNIMKDIAHHEYTQPTLIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQP
PVQRGDGPLAMVLAPTRELAQQIEKEVKRFSRSLESFRTAIVVGGTKSADQGSELRAGVD
VIVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMHNLPEKHQTLLFS
ATMPVEIETLAQEYLINPVQVKVGKVSSPTANVSQVLTKVSESEKIDCLLALLVEDASQA
EKSNQSFPLTIVFVERKTRCNEVAEALVAQGLQAVALHGGRSQSEREAALHDFRSGSTTI
LVATDVASRGLDVTGVAHVINLDLPKKTEDYVHRIGRTGRAGSTGQATSFYTDRDLFLVG
RIKKAIADVESGNTVAFATGKAARRKEREAAASQKEARNDLSKVMGSTCINIEDKYRFMI
APSVITSEGAADSAWDD
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatatccctcctcacctgagaaactcaagctcaaccactaccgttactactcgc
agaactcagtcaccgcctttaacagacactaatctctcccattcctcttcaaattccacc
tcctccgccacttcttcttcctccacattcaactctctctccttccggacctccgcctcc
gtcgcgcgaaccatctcagttcctcaacctgtttttcctcagtggacgccctccgaccgc
gtccttcgcttcactccagatcagattgaagaaattcgttctcagctcaaaataaatgtc
agtgttgcttcgggttcacctcctgcacctgcgcctattgaatcatttgaagatatgtgt
ttgcatcaaaatatcatgaaggatattgcgcatcatgagtatacgcaaccgactttgatt
caggctcaggcaatgacagttgcgcttagtggaagggatttgttgggctgtgctgaaact
ggtagtggaaaaactgcagcatttaccattcctatgatacagcattgcttggctcaacct
cctgttcagcgtggtgatggaccattggcgatggtattggctcctaccagagaacttgct
cagcaaattgaaaaagaggttaaacgttttagtagatctcttgagtccttcagaactgcc
atcgtggtgggtggaacaaagtctgctgaccagggatcagagctacgagcgggagtggat
gtaattgttgctactcctggaagattcattgatcatttacaacaaggaaacacttccctt
tccagaatttcatttgtcgttctggatgaagctgatagaatgcttgacatgggctttgaa
ccacagattagagaggttatgcacaaccttccagagaagcatcaaactttgctgttcagt
gcgactatgcctgtggaaattgaaacactagcacaggagtacttaattaaccctgttcaa
gtcaaggtaggaaaagtaagtagccctactgcaaatgtgtctcaagttctgacaaaggtt
tctgaaagtgagaagattgattgccttctagctctgcttgtggaggacgcatctcaggcc
gagaaatccaaccaatcctttccattgactattgtgtttgtggagaggaagacaaggtgc
aatgaagttgctgaagctttggtagcgcaaggtttacaggcagttgctcttcatggaggc
cgcagtcagagtgaaagagaagctgctttgcatgattttaggagtggatctactactatt
ttggttgccactgatgttgcatctcgtggattggatgtaactggagttgcacatgtgatt
aatctggatctcccaaagaaaacagaagattatgtgcatcgtattggaaggacaggccgt
gcagggtcaactggccaagctacttcattttacacggatcgagatctgttccttgtggga
cgaataaagaaagcaatagcagatgtcgaatcagggaacacagttgcttttgcaactggc
aaggctgcaagaaggaaggaaagagaagcagctgcttcacaaaaggaagctaggaatgat
ctgtccaaggtgatgggatccacatgtataaacattgaggataagtataggttcatgata
gccccttcagtcatcacaagtgagggtgcagctgacagtgcttgggatgattag
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