Populus alba (white poplar): 118045030
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Entry
118045030 CDS
T07314
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118045030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118045030
03012 Translation factors [BR:
palz03012
]
118045030
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118045030
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118045030
Translation factors [BR:
palz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118045030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
T2SSE
AAA_16
AAA_19
ABC_tran
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
118045030
NCBI-ProteinID:
XP_034909413
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All DBs
Position
8:626307..635691
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AA seq
1154 aa
AA seq
DB search
MQNSKLVLRSFLLGCSTTAKKKSFSYTIFSNKNNHPLFSLLLFLHNSNETSFVVTKRRGF
CGYAVEQFSDDEYECDFENHKASSSVANVDEWKWKLSLLLRSETDQEIVSRDRKDRRDYE
QISNLAGRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEH
LDRIQLSAGKVGGNADDASINQIEDTSPDENPDSFLDRSVMERVLQRRSLRMRNMQRAWR
ESLEGRKMMDFRKSLPAFQEKEKLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESG
RGAFCSIICTQPRRISAMAVADRVSAERGEPLGEAVGYKVRLEGVKGRNTHLLFCTSGIL
LRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLSRRQDLRLILMSATLNAELFS
NYFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLAPRKR
KNQITTLVEDALTNSSFDNYSSRARDSLARWMPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISCLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNVHKIVLATNM
AEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYH
LYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPKPLAVQNAIDF
LKMIGALDEKENLTNLGKYLTMLPVDPKLGKMLIMGAIFRCFGPILTIVSGLSVRDPFLL
PQDKKDLAGAAKSRFSAKDYSDHMALVRAYEGWKEAEKEGSAYEYCWRNFLSAQTLQAIH
SLRKQFNFILKDAGLIEEDTNNHNKLSHNQSLVRAIICSGLYPGIASVVHRETSMSFKTM
DDGQVSLYANSVNARYETIPYPWLVFGEKVKVNSVFIRDSTGVSDSVLILFGGALACGAQ
AGHLKMLNGYIDFFMDHNLAECFLKLNEELDKLIQKKLQDPKLDILKEGKYLMLAVEDLV
SGDQCEGKFVFGRESRKPKVTNDNDRFTKDGANPKSLLQTLLMRAGHSPPKYKTKHLKTN
EFRALVEFKGMQFVGKPKRNKQQAERDAAIEALAWLTHTSDNNQNEHDDSQPDVTDNMLK
LLGKRRRSKQRRPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcgaagcttgtgctaagaagtttccttctgggatgcagcaccaccgccaag
aagaagtcgttttcctataccatcttcagcaataaaaacaaccaccctttatttagtttg
cttttgtttctacataattctaatgaaaccagctttgtagtgaccaaaaggcgtggtttt
tgtgggtatgcagtagagcagttctccgatgacgagtacgagtgtgattttgaaaaccac
aaggcttcttcgtctgtggccaatgttgatgagtggaaatggaagctcagcttgctattg
cgtagtgaaacagaccaagagattgtttctagagatagaaaagacaggagagactatgag
cagatttcaaatcttgctggaaggatgggactttatagtgaactatatggaaaagtggtt
gttgcaagcaaggttcctctacctaactacaggcctgatttggatgataagcggccacaa
agggaggtggttatcccactaagtttgcaaaggagggttgagggtttacttcaggagcat
cttgatagaattcaactaagtgctggaaaagttggtggtaatgcagatgatgcgtccatc
aatcagattgaagatacaagtccagatgagaatccagattcatttctagaccgctctgtg
atggaaagggttcttcagaggaggagtttgcgaatgcgtaacatgcaaagagcttggcgg
gaatcacttgagggcagaaaaatgatggactttaggaaatctctgcctgctttccaggaa
aaggagaagttactccaagcaatagcaaggaatcaggtcattgtaatatctggagagact
ggatgtgggaaaaccactcaacttcctcaatatatactggagtcagaaatagaatctggg
cgtggagcattctgtagcataatttgcactcagcctcgaagaatatctgctatggctgtt
gcagatagagtgtccgcagagagaggagagcctcttggtgaagcagttggttataaagtc
cgactagagggtgtgaaaggaagaaacacacatctgcttttttgtaccagtggaatttta
cttcgacgcctattaagtgaccgcaacttgaatggcataacccatgttttcgttgatgaa
attcatgagcgaggcatgaatgaagacttcctattgattgtgctcaaggatcttctttca
cgtcgtcaggacttgagattgattttaatgagtgccactttgaatgcggaactcttttcc
aattattttggaggagcaccaactattcatattccaggctttacatatccagtgagggca
cattttttagaagatgtactggaaatgaccggatataagttgacttctttcaatcaaatt
gatgattatggccaagagaaaatgtggaaaacacagaggcaactggcaccacgaaaaagg
aaaaaccagatcactactctcgttgaggatgctcttactaattcaagttttgacaattat
agttccagagcacgtgactctctggcacgctggatgcctgattgcataggatttaacctt
attgaagcagttttgtgccatatatgtcggaaggaacgaccaggtgctgtcttagttttc
atgactggctgggaggatattagctgtttgagggatcaacttaaagcacatcctctcctg
ggtgatcctaacagaattctgcttctaacttgccatggttctatggcaacctcagaacag
aaactgatttttgagaaacctcctcctaatgtacataaaatagttcttgcaaccaatatg
gcagaggcaagcattacaatcaatgatgtagtttttgtcattgattgtgggaaggcaaaa
gaaaccacttatgatgctttaaacaacacaccttgtctgctaccttcttggatatcaaaa
gcatctgctcgacaaagaaggggtagggctggccgagtgcagcctggcgaatgttaccac
ctatacccaagatgtgtatatgaagcctttgccgaatatcaacttcctgaacttttgagg
actcccctgaactctctttgcttgcaaataaagagtttgcaggttggaagcataggagaa
ttcttgtcagctgctctccagccaccaaaaccattggctgtccaaaatgcgattgatttt
ctgaagatgattggtgcattagatgagaaggagaatctgacaaatcttgggaagtatttg
acaatgcttccagtagatcccaagctgggtaaaatgttaataatgggtgccatctttcgg
tgctttggtcctatactaacaatagtatccgggctcagtgtcagggatcctttccttctg
ccacaggacaaaaaggatttagctggggcagcaaaatctagattctctgcaaaagactac
agtgatcatatggctcttgtccgtgcatatgaaggatggaaagaagctgaaaaagaagga
tcggcatatgagtattgctggagaaatttcctgtctgcacaaactttgcaggccatccat
tctctaaggaagcaatttaacttcattttaaaagatgctggcttaatagaagaagataca
aacaaccacaacaaattaagtcacaaccaatcattggttcgtgcaattatatgctctggc
ctctatcctggaattgcgtcagtagtgcacagagaaacatccatgtctttcaaaacaatg
gatgatggccaagtttctctatatgctaattctgtgaatgcacgctatgagacaattccc
tatccatggctggtctttggtgaaaaagtaaaggtcaactcagttttcatacgtgattcc
actggtgtatctgattccgtactgatcctttttggtggtgcacttgcttgtggagctcag
gctgggcatctgaaaatgttgaacggatacattgatttcttcatggatcataatttggca
gagtgctttttaaagcttaatgaagaacttgataagcttattcagaagaagcttcaagat
cctaaacttgacattctcaaggaaggaaaatacctcatgcttgctgttgaagacctggta
tcaggagatcaatgtgaaggaaaatttgtgtttggtcgtgaaagcaggaagcctaaggta
actaatgataatgacagatttacaaaagacggagcaaatccaaaaagtttgctccaaacc
ctactgatgagagctggacactcccctccaaaatacaagacaaagcaccttaagacgaat
gagtttagggcactggttgaattcaagggaatgcagtttgtggggaagcccaagagaaac
aagcaacaagcagagagggatgctgctattgaagcactggcctggttaacccatacatcc
gacaataatcaaaatgagcatgacgactcccaacctgatgtcactgataacatgctcaaa
cttcttgggaaacgtcgtagatcaaagcagcgtcgccctggttga
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integrated database retrieval system
