Populus alba (white poplar): 118045047
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Entry
118045047 CDS
T07314
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
palz
Populus alba (white poplar)
Pathway
palz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118045047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118045047
03019 Messenger RNA biogenesis [BR:
palz03019
]
118045047
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118045047
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118045047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
118045047
NCBI-ProteinID:
XP_034909434
LinkDB
All DBs
Position
8:complement(554101..557658)
Genome browser
AA seq
661 aa
AA seq
DB search
MKPFFNSRRPKHHKQKGNTAPLNQQVFSTNPSLANSMSMQPQLGLVNPQIPIPFNNSNTL
LSNGQAMANMPPLIAQQPGILSGPNDLAILQLQNQVNKLNALKMLMDQVNQLQGELFGPS
FPNLPQQLNQNMGLLQNPMQNMMNPVMPLQMSINSQVGSFNVPSSNHQVVGAQSQNFFVN
PPFGAEQRVNPNQPNFIMPTTSAYGSKLLHVADQQVQGKLSASQQGQSFLMPTVGANGPN
VANQQVEGNSPALQQSEKVPMAANGAKPLPIATQQGQANSSASQQSWNSQPSTYNRWQGN
TARNGQSSTPKSKWEKSSGKNFKNNRNRGRSQSGHQKSDFNCMDNGKRKLEFSNEHGRKG
NGNERVAKFGRTDLTDQATEEKSKPSRTVFYTEQEINQWRESRRKHYPTKTNIEKKQVEV
IDREANLRRKQLKEILAKQAELGVEVAEIAPDYLLDSEKLGVQVAEIPPPHVLNSEKLGV
EVAEIPPRHLLDSEKQEHGREDNRRSLTKKGKFWNKNDKRGRFNKKGRSAKQVGSANEER
KPTLLEKLLSTDIKRDKRQLLQVFRFMVANSFFKDWPEKPLKFPSVVVKEDGYEDEIVEK
KSSLVREEVSEDRNNTIAENFGDRDDNIEHDAQVEPGNCFVRGKCDIVDEVDRVEEGEIV
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctttcttcaattcccgtcgtcctaagcatcacaagcaaaagggcaacactgct
cctcttaatcaacaggttttttcaacaaacccatctttagcaaattcaatgtcaatgcaa
ccgcaactgggtttagtcaatcctcagattccaattcctttcaataattcaaacaccctt
ttaagcaatggacaggccatggctaatatgccacctttgatcgctcaacaacctggtata
ttgagtggacctaatgatctggctatccttcagttacaaaatcaagtcaacaagttgaat
gctttgaagatgttgatggatcaagtaaaccaattgcaaggagagctgtttggtcctagt
ttccccaatttgccacaacaactcaatcaaaatatgggtttgttacaaaatccaatgcag
aatatgatgaatcctgttatgcctttgcaaatgtcaataaattctcaagttggttccttt
aatgtcccttcaagcaatcaccaagtggtaggtgctcaaagtcagaacttttttgtaaat
ccaccgtttggagctgagcaacgagttaatccaaaccaacccaacttcataatgccgaca
actagtgcatatggatcgaagctattgcatgttgcagatcagcaagtccaagggaaattg
tctgcgtcacagcaaggtcagagctttttgatgcccacagtgggtgcaaatggaccaaat
gttgcaaatcagcaagtggaagggaactcgcctgcattacagcaaagtgagaaagttcca
atggctgcaaatggagcaaagccattgcctattgcaactcagcaagggcaagcgaactca
tctgcgtctcagcaaagttggaactcgcagccctctacatacaataggtggcagggtaat
actgccagaaatggccagagtagtactccaaaatccaaatgggaaaagtcttctggaaaa
aacttcaaaaataatcgaaatagagggcgatcacaatcaggacaccagaaatctgatttc
aattgcatggataatggaaagagaaagcttgagttttctaatgaacatggcagaaaaggg
aacggcaatgagagggtagcaaaatttggtcgcactgatcttacagaccaagctacagaa
gagaaaagtaaacctagcagaactgttttttacacggaacaagaaatcaatcaatggcgt
gaatcacgtaggaagcactacccaacaaaaaccaacatcgagaagaagcaggtggaggtc
attgatagagaggccaaccttcgtcgcaagcaactcaaggagattttggcaaagcaggct
gagctaggagttgaagttgcagaaatagcaccagactatctgttagattcagagaagcta
ggagttcaagttgcagaaataccaccaccacatgtgttaaattcagagaaactaggagtt
gaggttgcagaaataccaccacggcatctgttagattcagaaaaacaagagcatggaagg
gaagataacagaagatccttgactaagaaagggaaattctggaacaagaatgataaaaga
ggaagatttaacaaaaaaggtcggtcagccaagcaggttggatcagcaaatgaagaaagg
aagccaacactattggagaagcttctgagcacagatataaagagagataagcgccaattg
ttgcaggtttttaggttcatggtggcgaactctttcttcaaggattggccagagaaaccc
ttgaaatttccttcagtagtggtcaaagaagatggttatgaggatgagattgtagaaaaa
aaatcctcacttgtcagggaggaagtttctgaagacaggaacaacaccatagctgaaaat
tttggtgatagagatgacaacatcgaacatgatgctcaagtcgagccggggaattgtttt
gtcaggggaaaatgtgatattgttgacgaagttgatagggttgaagagggagaaattgtt
gactaa
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