KEGG   Populus alba (white poplar): 118045687
Entry
118045687         CDS       T07314                                 
Name
(RefSeq) THO complex subunit 4A
  KO
K12881  THO complex subunit 4
Organism
palz  Populus alba (white poplar)
Pathway
palz03013  Nucleocytoplasmic transport
palz03015  mRNA surveillance pathway
palz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:palz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118045687
  09122 Translation
   03013 Nucleocytoplasmic transport
    118045687
   03015 mRNA surveillance pathway
    118045687
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:palz03019]
    118045687
   03041 Spliceosome [BR:palz03041]
    118045687
Messenger RNA biogenesis [BR:palz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     118045687
    TREX complex
     118045687
Spliceosome [BR:palz03041]
 Complex C
  Other components
   EJC/TREX
    118045687
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    118045687
SSDB
Motif
Pfam: RRM_1 FoP_duplication Btz RRM_3
Other DBs
NCBI-GeneID: 118045687
NCBI-ProteinID: XP_034910272
LinkDB
Position
1:28208171..28216316
AA seq 242 aa
MSSALDMSLDDIIKNSKKPGSANFRGRGRGHPSGAGPARRFPNRAANRSAPYTAAKAPES
TWQHDMFRDQSGRTSSLEGAKLYISNLDYGVSNEDIKELFLEVGELKRYSIHYDRSGRSK
GTAEVVFARQSEAVAAVKRYNNVQLDGKPMKIEIVGTNFVAPPALPAANAAFGNSNGVSG
RGRGRGGALGRLRGGGIGGVGGGGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQ
IN
NT seq 729 nt   +upstreamnt  +downstreamnt
atgtcaagcgctttggatatgtccctcgacgatatcatcaaaaatagcaaaaagcccgga
tccgctaacttccggggccgtggtcgaggccacccttccggagcaggtcctgctcgtcgc
ttccctaaccgcgccgccaatcgttcagctccttataccgccgctaaggctccggaaagc
acgtggcaacacgacatgttcagggatcaatcaggtcggacctcctctttagaaggagca
aagctctatatttccaatttagattatggagtctctaacgaggacatcaaggaattgttt
ttggaagtgggtgaactgaagaggtattcgatccattacgatcggagtggcagatcgaag
ggaacggcagaagttgtcttcgcacgacaatctgaagctgtcgctgctgttaagagatac
aacaatgttcagcttgatgggaaaccgatgaagatagagattgtgggaacaaattttgtt
gctcctcctgcgcttccggctgctaatgctgcttttggaaattctaatggagtttctgga
cgtggacgaggtaggggtggtgcactgggaagactgcgtggcggtggtattggcggcgtt
ggcggcggcggcgggcgtggatttggaaggggacgcggacgtggaaggggccgtggtgaa
aaggtatctgctgaagatcttgatgcagatctggagaagtatcattcagaagctatgcag
ataaattga

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