Populus alba (white poplar): 118046113
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Entry
118046113 CDS
T07314
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118046113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118046113
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118046113
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118046113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
118046113
NCBI-ProteinID:
XP_034910779
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All DBs
Position
17:10880856..10886497
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AA seq
666 aa
AA seq
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MSALLNSSLNGSASNLPDTTGRSFATSFSSQSGAASPVFHHNGTFQGLHNIHGSFNVPNM
PGTLASRNSTVNNIPSGGVQQPTGSLSGGRFASNNLPVGLSQLSHGSSHGHSGVTNRGGV
SVVGNLGYGSNTNGIGGSISGILPASAGIGNRNAVPGLGVSQILGNTGPRITSPGGTMVS
GGNIGRSLSTGGGLSVPGLASRLNLTANSGSSSLSVQGQNRLMGGVLSQGNPQVIPMLGN
SYHTAVGPLSQSHVPGVNNLSSMGMGMLNDVNSNDISPFDINNDFPQLTSRPSSAGGPQG
QLGSLRKPGIGVGPIVQQSQEFSIQNEDFPALPGFKGGNADYTMDMHQKEQLHDNTISMM
QSQHFSIGRSAGFNLGDTYSSYRPQQQQQQQHSPAVSSSVSFASINNQDLHASEIFPSSH
SIYHPQTSGPPGLGLRPLNLPNTVSSVGSYDQLIQQYQHPSHSQFRLQQMSAVNQPFRDQ
GIKSMQAAQSAPDPFGLLGLLSVIRMNDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSP
WSEEPAKGDLEFNVPKCYYAKPPPPLDHHYFSKFSIETLLYAFYSMPKDEAQLHAANILY
ERGWLYHKEQRRWLKRVPNTEPLVKTSAYEKGSYHCFEPNTFEIKLKENFVLHYEMVEKR
PSLPHH
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgttacttaattcttctctaaacggatcagcttcaaatcttccagataccacg
ggacgatcttttgctacatccttctctagtcagtctggtgcagcatctcctgtttttcat
cacaatggaacttttcaagggctgcataatattcatgggagctttaatgtacccaacatg
ccaggaacacttgcatcaagaaactccacagtgaacaacattccttcgggtggggttcaa
caaccaactggaagtctctccggtggaaggtttgcatccaataatcttcctgttggtctc
tctcagttgtcacatggtagttcccatggacattcaggggttacaaatagaggaggtgta
agcgttgtaggaaatctgggatatggtagtaatacaaatggaattggtggttctatatct
ggaattctcccagcctctgctggaataggtaaccggaatgctgttccaggtttgggggta
tcccaaattttgggtaatacaggtccaaggattacgagtcctggagggaccatggtatct
ggtgggaacattgggagaagcttaagcacaggtggaggactatctgtccctggtcttgca
tctcgtctgaatttaactgcaaatagtggatctagcagtttaagtgtgcaaggacaaaat
agattaatgggtggtgtgctttcacaaggaaatccacaggtaattcctatgttaggaaac
tcataccatactgctgttggtcctctttcccaaagtcatgtaccaggtgtgaacaatctc
agctctatgggaatgggaatgttgaatgatgtgaattccaatgacatttcccctttcgac
attaacaatgatttccctcagttgacaagtcgtcctagttctgctggagggcctcaaggt
caattgggttcactacgaaaacctggtataggagttggtcccattgttcaacaaagccaa
gagttcagcattcagaatgaagattttccagctttaccaggatttaaaggtggtaatgct
gattatacaatggatatgcatcagaaagaacaactgcatgataatacgatctcaatgatg
cagtctcagcacttctctattggaagatctgctgggttcaacttaggagacacttactca
tcatatcgtcctcagcagcaacagcaacagcaacactcccctgctgtcagtagtagcgtc
tcttttgcatctataaacaatcaagatctacatgcttcagaaatatttccttcctcacat
tcgatctatcacccacagaccagtggaccacctggacttggtctgagacctttaaatttg
ccaaatacagtatctagtgttggatcatatgaccagctaatccagcagtatcaacaccca
agccattcccagtttcgactacaacaaatgtcagctgtcaatcaaccatttagagatcag
ggcataaaatccatgcaggcagcacagtctgcgcctgatccatttgggttacttggcttg
ttaagtgttataaggatgaatgatcctgatctgacctccctggcacttgggattgatttg
accacgcttggattgaatttgaattcaacggaaaatcttcacaagacttttggctcccca
tggtctgaagagcctgctaagggtgatcttgagttcaatgttccaaaatgctattatgct
aagccaccacctccactggatcatcattacttttcaaaattctcgatagaaacgttgctt
tatgcattttacagcatgccgaaagatgaagctcaactacatgctgccaacatactttat
gaaagaggctggttgtaccacaaggagcaacggcgttggctaaaaagagtacccaacaca
gagccacttgttaaaacgagcgcatatgagaaagggtcttaccattgttttgaaccaaac
acatttgagataaagcttaaggaaaatttcgttctccattatgagatggtggaaaagaga
ccgagcctaccacatcattaa
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