Populus alba (white poplar): 118046787
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Entry
118046787 CDS
T07314
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118046787
09123 Folding, sorting and degradation
03018 RNA degradation
118046787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118046787
03041 Spliceosome [BR:
palz03041
]
118046787
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118046787
mRNA degradation factors
5'-3' decay
Lsm complex
118046787
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118046787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
118046787
NCBI-ProteinID:
XP_034911709
LinkDB
All DBs
Position
2:complement(13129655..13132091)
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AA seq
150 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEIKSRSDRKPPGVGRGRGRGREDGPGGRPAKGIGRGLED
VAAKGMGGGRGRGGPGGKIGGSRGAGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctttactcaagactgctcaaggccacccaatgttggtggaattgaaa
aacggagagacttacaatgggcatttggtcaattgtgatacttggatgaacatccatctc
cgtgaagttatctgtacatctaaggatggagataggttttggcggatgcctgaatgctac
attcgtgggaatactattaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaaatcaagagtcgctcagatcggaagccacctggagtagggcgtggaagaggaaga
ggtagagaagatggtcctggtggaaggccagcgaaagggattgggcgcggccttgaagat
gtagctgctaagggcatgggtggaggtcgtggcagaggtggtccaggtggaaagattggt
gggagcagaggtgcaggccggggccggggctaa
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