Populus alba (white poplar): 118046893
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Entry
118046893 CDS
T07314
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118046893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118046893
03009 Ribosome biogenesis [BR:
palz03009
]
118046893
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118046893
Spliceosome [BR:
palz03041
]
Complex A
U2 snRNP components
U2 related factors
118046893
Complex B
118046893
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
118046893
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
90S particles
Helicases
118046893
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
ABC_tran
T2SSE
AAA_7
AAA_30
Flavi_DEAD
FtsK_SpoIIIE
TsaE
PhoH
AAA_33
AAA_29
Motif
Other DBs
NCBI-GeneID:
118046893
NCBI-ProteinID:
XP_034911870
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSLSAKIVKSNGAMGNNNNGGSSLINRWNGKPYSQRYYDILEK
RKNLPVWHQKEDFLQVLKKNQAIILVGETGSGKTTQIPQFVLEAVDLESPDKRRKMMIAC
TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL
LERYKVIILDEAHERTLSTDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFGEAPLM
KVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPLGDILVFLTGEEEIEDACRKITK
EIGNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLQEGGPSGRKIVVSTNIAETSLTI
DGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF
NQDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DEGNLTKLGEIMSEFPLDPQLSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNHRALKAADNVRQQLVRIMAR
FNLKLCSTDFNSRDYYINIRKAILAGYFMQVAHLEQSGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNYIRTVLDIRGEWLVDIASHYYDLQNFPQCEAKRVLEKLYRKRERE
REENRNRK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagtttattcgacgtggttgacgagacgtcgctt
tctgcaaagatcgtgaaatcgaacggagcgatgggtaacaataacaatggaggaagtagt
ttgataaatcggtggaatgggaagccctactcacagaggtactatgatatattagagaag
aggaagaatttgcctgtttggcatcaaaaagaggatttcttacaagttttgaagaaaaat
caggctataatccttgttggcgagactggtagtggtaaaaccactcagattcctcagttt
gttttggaagctgtagacttagaatctccggataaacgtaggaagatgatgattgcatgt
acccaacctcgaagggtggctgcaatgtctgtttctcgacgtgttgctgaggagatggat
gttacgattggcgaagaggttggttatagcatccgttttgaagactgtagcagtgcgaga
acggttttgaagtatcttactgatggtatgcttttaagagaggcaatgaccgatccactt
ttggaacggtacaaagtaataattcttgatgaggcccatgaaagaactctatcaacagat
gtgctattcgggcttcttaaagaagtgctgaaaaataggcctgacctgaagctagttgta
atgagtgcaacacttgaggctgagaaatttcagggttattttggtgaagcaccgcttatg
aaagttcctggcaggcttcatccggttgaaattttctatacccaggagcctgagagggat
tacctcgaggcagcaattcgaacagttgtccagatacacttgtgtgaaccccttggagat
atacttgttttcctaactggggaggaggagatagaagatgcttgccgaaaaataacaaaa
gaaattggaaatttgggggaccaagtggggccagtgaaagtggtgcctctatattctacg
cttccaccagccatgcagcaaaaaatattcgaacctgctccacctccactgcaggagggt
ggcccttctggaaggaagattgtggtgtcaacaaacattgcagaaacttctttgactata
gatggtattgtttatgttattgaccctggcttctcaaaacaaaaggtttataacccacga
gtgcgggttgaatctttgttagtttcccccatatcaaaggctagtgcccaccagagatca
ggacgtgctggaagaactcaaccaggcaaatgttttagactctacacagagaaaagtttc
aaccaggatcttcagcctcagacctatccagagatattgcggtcaaaccttgcaaataca
gttctaacgttgaagaaattgggtattgatgatctggtgcactttgatttcatggatcct
cctgcccctgagacattgatgcgagcattggaggtgttgaattatttgggagcattggat
gatgaggggaacttgacaaagcttggggagatcatgagtgaatttcccttggatcctcag
ctgtcaaagatgcttgttgtgagtccagaattcaactgttcgaatgaaattctttcaatt
tcagccatgctttcagtacccaattgctttgtccgccctagggaggctcaaaaggctgct
gatgaagcaaaagcaaggtttgggcacattgatggggatcacctcacgctgttgaatgtg
tatcatgcatataagcaaaacaatgaggatccatcttggtgctatgaaaattttgtcaat
catagagcactgaaggctgccgacaatgtaagacaacagcttgtccgtatcatggccagg
tttaacctcaagttatgcagcactgacttcaacagccgtgactactacatcaacataaga
aaagctatattagccggatactttatgcaggttgctcacctggaacaaagtggacactac
ttgacagtgaaagacaaccaagtggtgcacctgcatccttcaaattgtttggatcacaag
ccggagtgggtgatttacaatgaatatgtcttgaccagccggaattatatacggactgtg
ctagacattcgtggggaatggttggtagacatagcatcacattactatgacttgcaaaat
ttcccgcaatgtgaggccaagcgggttcttgaaaagctttacaggaagcgggagagggag
agggaggagaacaggaacagaaaatga
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integrated database retrieval system
