Populus alba (white poplar): 118047307
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Entry
118047307 CDS
T07314
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03020
RNA polymerase
palz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118047307
09124 Replication and repair
03420 Nucleotide excision repair
118047307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118047307
03400 DNA repair and recombination proteins [BR:
palz03400
]
118047307
Enzymes [BR:
palz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118047307
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118047307
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118047307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
118047307
NCBI-ProteinID:
XP_034912453
LinkDB
All DBs
Position
4:complement(3698412..3707705)
Genome browser
AA seq
1198 aa
AA seq
DB search
MEDLDEYDHQPMNEDMEPEEEDADEEITQEDAWAVISAYFEDKGLVRQQLDSFDEFIQNT
MQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA
ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE
KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAES
QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC
YDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLP
HVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR
KLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVL
NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV
YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRL
RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRETPDE
GGWNDLVSKGFIEYIDTEEEETTMISMTIHDLVQARLNPEEAYSDTYTHCEIHPSLILGV
CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH
LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK
EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEDAQGQSARYT
RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT
YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD
NISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI
LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIAN
LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKKGA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccttgacgagtacgatcatcagccgatgaatgaagatatggaaccagaagaa
gaagacgctgatgaggagatcacgcaggaagatgcctgggccgtcatttctgcttatttt
gaagacaaaggcttggtgagacaacaactcgactccttcgatgagtttattcaaaatacg
atgcaggaaatcgttgacgagtctgctgatattgagattcggcctgaaagccagcacaat
ccgggtcaccagtctgattttgctgagactatctacaagatcagttttggccagatatac
ttgagtaagcccatgatgacagagtctgatggagaaactgcaactttgtttcccaaagct
gcaaggttgaggaacctgacatactcggctcctttgtatgtggatgttacaaagagggtt
ataaagaaaggtcatgatggtgaagaagtcactgaaactcaagacttcaccaaagttttc
attggaaaggtccctattatgcttcgatcaagttattgcacattataccagaattcagaa
aaggatttgacagagcttggcgagtgtccgtatgatcagggtgggtatttcattatcaat
ggtagtgaaaaggttctaattgctcaggagaagatgagcaccaatcatgtgtatgtgttc
aagaagaggcagccaaacaagtatgcatatgtaggagaagttcggtctatggcagagtct
cagaaccggccacccagtaccatgtttgtgcggatgctttctcggactagtgctaaaggg
ggctcttcagggcaatacatccgtgctactcttccatacattcgaactgaaattccgatt
atcattgtttttcgtgctttgggttttgttgctgacaaagacattttggaacacatatgt
tatgattttgctgatactcaaatgatggagttgcttcggccatctctggaagaggcattt
gttattcaaaatcagcaggttgctcttgactacattggaaagcgtggggcaactgttggt
gtaactagggaaaaaaggattaagtatgccaaagagattcttcaaaaagaaatgcttcct
catgttggtgttggagaatactgcgagaccaaaaaagcttattacttcgggtatatcatt
caccggcttttactttgtgcacttggccggagggcagaagatgatagggatcattatgga
aacaagcggcttgaccttgctggtcctttacttggtggcttgtttagaatgttattcaga
aagttgaccagggatgtcaggtcttatgtgcaaaagtgtgttgataatgggaaggatgtt
aacctacaatttgccattaaagcaaaaaccattaccagtggtcttaaatactcacttgcc
actgggaactggggacaagcaaatgcagctggaacaagagctggagtgtcacaggtgtta
aatagattgacatatgcctctacactgtcacatttaagaagattaaattctccaattggg
cgtgaagggaaattggcaaaaccaaggcagctacataattcacaatggggaatgatgtgt
cctgctgaaacacctgaaggacaagcttgtggattagtgaagaatcttgcattgatggta
tacattacggttggttcagcagcatatcccatcctggagtttttagaagaatggggtacc
gagaattttgaggaaatatcccctgcagttattccccaagcaacaaaaatttttgtcaat
ggtggctgggtgggtatccatcgtgatcctgatatgttggtgaagacattgagacggctg
cggagacgggttgatgtcaatactgaagttggggtcgttagagatattcgcttgaaagag
ttgcggatttacactgactatggccggtgcagtcgtcctctattcatcgtggagaaacaa
aagcttctaataaggaagaaggacatccatgcactgcaacagagggaaaccccagatgag
ggtggctggaatgatcttgtttcaaagggattcattgaatatattgacactgaggaagaa
gagaccactatgatatccatgaccatacatgatcttgtacaagcgaggcttaatccagag
gaagcatattctgatacttacacccattgtgagatccacccatcattgattttaggtgtt
tgtgcttctatcattccttttcctgaccataaccagtccccacgtaacacttaccaatct
gctatgggaaagcaagccatgggaatttatgtcaccaattaccaattccgaatggatacg
ctggcttatgttctctattatcctcaaaagccacttgttactacaagagccatggagcat
cttcattttcggcaacttcctgctggcattaatgctattgttgcgattgcttgttattct
ggatataaccaagaagattctgttattatgaaccaatcatcaattgatcgtggattcttt
agatcacttttcttccgttcatatagggacgaggagaaaaagatgggcacacttgttaaa
gaggattttggtcgcccagacagaagtaacacaatgggcatgcggcatggctcttacgat
aaattggatgatgatggtcttgcacctcctggcacaagagtttcaggggaggatgtgatc
attggaaagacaactccaatcgctcaggaagatgctcagggacagtctgcacgctacacg
aggcgtgatcacagcataagtttacgtcacagtgaaactggaatggtggatcaagttctg
cttacaacaaatgctgatgggttgaggtttgtgaaagtaagggtcagatctgtccgcata
cctcagattggagacaagtttagtagtaggcatggtcaaaagggaactgttggcatgact
tacacacaagaagacatgccttggactgtggaaggcatcactcctgatattattgtcaac
ccacatgctattccctctcgaatgacaattggacagcttatcgagtgtattatgggaaag
gttgcagcacatatgggaaaggaaggggatgccacaccatttactgatgtcactgtggat
aatattagcaaagctcttcacaagtgtgggtatcaaatgcgagggtttgagaccatgtat
aatggtcacactgggcgccggctgtcagcgatgattttccttggtcccacttattatcaa
aggctaaaacatatggttgatgacaagatccattcccgtggaagaggccctgtgcagatc
ctcacaaggcagcctgctgaaggaaggtcgcgtgatggtggtctccgctttggtgagatg
gaacgagattgcatgatagcacatggtgccgcacacttcttgaaagagaggctatttgac
cagagtgacgcatatagagtccatgtctgtgagcgttgtgggttgatagctattgcgaat
ctcaagaagaattcttttgaatgcagaggttgcaagaacaaaaccgacatcgttcaggtg
cacattccttatgcctgtaagctactcttccaagagcttatggccatggccatagctcct
agaatgcttacaaaagatattaaacaggccaagagccagaagaagaagggagcttaa
DBGET
integrated database retrieval system
