Populus alba (white poplar): 118047369
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Entry
118047369 CDS
T07314
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118047369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118047369
03041 Spliceosome [BR:
palz03041
]
118047369
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118047369
Spliceosome [BR:
palz03041
]
Complex B
Other components
Prp19-related factors
118047369
Complex C
118047369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_19
TPR_15
TPR_12
ARM_TT21
UTP6_C
Motif
Other DBs
NCBI-GeneID:
118047369
NCBI-ProteinID:
XP_034912542
LinkDB
All DBs
Position
4:3107046..3112001
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AA seq
908 aa
AA seq
DB search
MSISKELYPSQDDLLYEEEILRNPFSLKLWWRYLIARRESPFKKRFIIYERALKALPGSY
KLWHAYLVERLDIVRNLPITHPQFETLNNTFERALVTMHKMPRIWVMYLQSLIRQKLVTR
TRRVFDRALCALPVTQHDRIWELYLSFVSQEGFPIETSLRVYRRYLMYDPSHIEDFIEFL
LNSGLWQEAAERLASVLNDDQFYSIKGKTKHSLWLELCDLMTRHAKEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
AIKMEKMDLSDDEENEVEENGIELDEDVRLDWSSKFEKKLLNGFWLDDDNDVDLMLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPH
TLWVAFAKLYEDHNDLVNARVIFDKAVQVNYKTVDNLASVWCEWAEMEIRHTNFKGALEL
LRRATAEPSVEVKRRVAADGDEPVQIKVHKSLRLWAFYVDLEEGLGTLESTRAVYERILD
LRIATPQIIINYAWLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK
LERARELFEHAIEMAPADSVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKLSMY
EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYADLEKNLGEIDRARGIYVFA
SQFADPRSDLDFWNQWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQR
LNIDDAKDKLKQAGLPEDEMAALERQLAPAINKTTARDSSRTVGFVSAGVQSQSDGGMQV
TANQEDIELPEESDSEDDEKVEIAQKDVPSAVFGGLAGKREEPEKDDAKDGGSRLGALER
IKRLKRGG
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttccaaagaactgtacccttctcaagatgatcttctctacgaagaagaaatc
ttgagaaaccctttttctttgaagctctggtggcgctatttgattgcccgaagagaatcc
cctttcaagaaacgcttcataatttatgaacgagctctcaaagcgttgcctggaagctac
aagctctggcatgcttatttggttgagcggctcgacatagttcggaatttgccaattacc
catcctcagtttgaaactcttaataacacttttgagagggctttggttactatgcataag
atgcctaggatctgggttatgtatttgcagagtttgattcgtcagaagttagtgacgagg
acgaggagggtttttgatagggctctctgtgcgttgcctgttacacagcacgataggatt
tgggaattgtatttgagttttgtgagtcaagagggttttcctattgagacctctcttagg
gtttataggaggtatttaatgtatgacccgagtcatattgaagattttattgagtttttg
ttgaattctgggctttggcaagaggctgcagagaggttggcgtcggtattgaatgatgat
cagttttattcaatcaaagggaagaccaagcatagcttgtggcttgagttgtgtgatttg
atgactaggcatgcgaaggaggtttcagggttaaacgtggatgcaataattaggggtggg
attaggaagtttacagatgaggttgggaggctgtggacctcgcttgctgattattatatc
aggagggaattgtttgagaaggcaagggatatttttgaggaggggatgactactgtggtt
actgttagggatttcagtgttattttcgacgcgtactcacaatttgaagagagtatggtt
gctatcaagatggagaaaatggatttgagcgacgatgaggaaaatgaggttgaagagaat
ggtatcgagttagacgaggatgttcggttggattggagttccaagtttgagaagaagtta
cttaatggcttttggttagatgatgacaatgacgtggatttgatgctagcacgtctggag
tatctaatggatagaagaccagaattagcaaatagtgttcttcttcgacaaaatccacat
aatgtggagcagtggcataggagggtcaagctatttgagggaaatccaacgaagcaaatt
ctgacgtatactgaagctgtgaggacggtggatccaatgaaagcagtggggaagcctcat
actttgtgggttgcatttgcgaaattgtatgaggatcacaatgatcttgtcaatgcaagg
gtaatttttgacaaggcagtgcaagtgaactacaagactgtcgataatttggcaagtgta
tggtgtgagtgggctgaaatggaaattagacacacgaatttcaaaggtgcgcttgagctg
ttgagacgggccaccgcagaaccatcagttgaggtcaaacggagagtggcggctgatggg
gatgaaccagttcagataaaggttcacaagtccttgagactatgggctttttatgttgat
ttggaggagggcctgggtaccttggagtccactcgagcagtgtatgaacggatactggac
ctgcgcatagccaccccacaaatcatcatcaattatgcttggcttctagaggaacataaa
tactttgaagatgcattcaaggtatatgaaaggggagtcaaaatattcaagtatcctcat
gtgaaagacatttgggtcacatatctctcaaagtttgtgaagagatatggcaagacaaaa
ctagagcgggcgagggagttgtttgaacatgctattgaaatggctcctgctgactcggtg
aaaccgttgtatcttcaatatgcaaagctagaagaggactatggtttggcaaagcgagcc
atgaaggtatatgatcaagcaaccaaggctgttccaaacaatgaaaaactgagcatgtac
gaaatttatattgctcgtgcagctgagatatttggtgttccaaaaacaagggaaatatat
gagcaagcaatagagtctggccttccagacaaagacgtgaagacaatgtgcttgaagtat
gctgacttagagaagaaccttggagaaattgatcgtgcacgtggcatatatgtatttgca
tcccaatttgctgatccgcgatctgatttggatttctggaaccaatggcatgagtttgag
gttcaacatggaaatgaagataccttcagagaaatgttgcgtattaaacgaagtgtgtct
gcaagctatagccagacacattttattcttccggagtatttgatgcagaaggatcagaga
ctgaacattgatgatgccaaagacaaattgaaacaggctgggctccctgaagatgaaatg
gccgctctagagaggcaattagctccggcaatcaataaaaccactgctagagatagcagc
aggacagtgggctttgtgagtgctggagtgcaatctcagtcggatggagggatgcaggtt
actgcaaaccaggaagacattgagcttccagaagagagtgactctgaagacgatgaaaaa
gttgaaattgcacagaaggatgttccctctgctgtgtttggtggactggctgggaagagg
gaagagcctgagaaagatgatgcaaaggatggtggcagtcgtcttggtgccctcgagagg
atcaagagactaaaacgtggaggatga
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