Populus alba (white poplar): 118047961
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Entry
118047961 CDS
T07314
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
palz
Populus alba (white poplar)
Pathway
palz04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118047961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
palz04131
]
118047961
Membrane trafficking [BR:
palz04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118047961
Hops complex
118047961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
zf-C3HC4_2
zf-RING_5
zf_RING_Vps8_fungal
TPR_GEMI5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
118047961
NCBI-ProteinID:
XP_034913369
LinkDB
All DBs
Position
14:complement(15721828..15726389)
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AA seq
961 aa
AA seq
DB search
MYQWRKFEFFEEKYGGKSSIPEDVTAGKIECCSSGRGKVVIGCDDGTVSLLDRGLKLNFS
FQSHSSSVLFLQHLKQRNFLVTVGEDEQISPQQSAMCLKVFDLDKMQSEGTSATTPDCIG
ILRIFTNQFPEANITSFLVLEEAPPILLMAIGLDNGCIYCIKGDIARERITRFKLQVDNV
SDKSHSSITGLGFRVDGQALQLFAVTPDSVSLFSMHNQPPRRQTLDQIGCNFNSVTMSDR
LELIIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCVIADQRTGKDTFNVYDLKN
RLIAHSLVVKEVSHMLCEWGNIILIMTDKSTLCIGEKDMESKLDMLFKKNLYTVAINLVQ
SQQADAAATAEVLRKYGDHLYSKQDYDEAMIQYISTIGHLEPSYVIQKFLDAQRIYNLTS
YLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNVFIKSEDGAGEHKFDVETAIRVCRAAN
YHEHAMYVAKKAGRHELYLKILLEDLGRYEEALQYISSLEPSQAGVTVKEYGKILIEHKP
VKTIEILMRLCTEDGESTKRESSSSTYLTMLPSPVDFLNIFIHHPPSLMDFLEKYTDKVK
DSPAQVEIHNTLLELYLSNDLNFPSISQASNGVDHTLKARSGSLVIPKAESKLKSSADHK
DTSKERDRMERCEKGLRLLKSAWPSDLDQPLYDVDLAIILCEMNAFKDGLLYLYEKMKLY
KEVIACYMQSQDHEGLIACCKKLGDSGKGGDPSLWADLLKYFGELGEDCSKEVKDVLTYI
ERDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEEDRRAIEKYQEDTLTMRK
EIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECASEYRSVL
ETKRSLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKTSNGSTGTGRTGDTSSSSG
F
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagtggagaaaattcgagttcttcgaggagaaatacggaggaaagagctccatt
cccgaggatgtgacggcagggaagatcgagtgctgttctagcggcagagggaaggtggtg
atcggctgcgatgatggcactgtaagcttgctggatcgtggcctcaagctcaatttctct
ttccaatctcactcctcctctgtcctcttcctccaacacctcaagcaaaggaattttttg
gtgactgtgggtgaggatgaacaaatatctccgcagcaatctgccatgtgcctcaaagta
tttgatctcgacaagatgcaatccgaaggcacgagtgctactacccctgattgtattgga
atattgcggattttcaccaatcaatttcccgaagcaaatattacttcttttttagtacta
gaggaagctcctccgatactactcatggctattggtttagacaatggttgcatttactgc
atcaaaggggatattgcgagggaacgaatcacgcggttcaagctccaagtggataatgtt
tctgataaaagtcattcatcgattacaggtcttggattcagagtggatggtcaagccctt
caattatttgccgtgactccagattcggtgagcttgttcagcatgcataatcaaccaccc
aggagacaaaccttagatcagattggatgtaatttcaatagtgttacgatgagtgatcgt
ttggagttaataattggccggcccgaggctgtgtatttttacgaagttgatggacgtggt
ccttgttgggcatttgagggagagaagaaatttctagggtggtttcgtggttacctttta
tgtgttattgcagaccaaaggactgggaaagacactttcaatgtttatgacctgaagaac
cgtttgatagcccacagtctggtggttaaagaagtttctcacatgctgtgtgaatggggt
aacattattcttataatgactgacaaatcaactctgtgtatcggggaaaaggatatggaa
agcaagctagacatgctcttcaagaagaatctgtatactgtagctatcaatctagttcag
agtcagcaagctgatgctgctgctactgcagaagttctaaggaagtatggagatcatcta
tatagcaagcaagattatgatgaggccatgatacagtacatctccactattggtcacctt
gaaccttcatatgtgatacagaagtttctggatgcacagagaatatacaaccttactagt
tacttggaaaaattacatgagaaggggcttgcttctaaagatcatacaaccttgctctta
aactgctataccaaattgaaagatgttgagaagcttaatgtatttattaaaagtgaagat
ggtgctggagaacataagtttgatgtggagactgcaataagggtctgtcgtgctgccaat
taccatgagcatgcaatgtatgtcgccaagaaggcagggaggcatgaactgtacttgaag
atcttacttgaagaccttggcagatatgaggaagccttgcagtatatttcaagtcttgaa
ccaagtcaggctggtgtgactgtgaaggagtatggtaaaattctcatagagcacaagcca
gtgaagacaatcgagatactcatgaggctttgcaccgaggatggagaatcaacaaagaga
gaatcctcaagtagcacatacttaactatgctgccatctcctgttgattttctcaacatt
ttcatccatcatccaccgtccctcatggactttcttgaaaaatatacggacaaggtgaag
gactcacctgcacaagtagaaattcacaataccctcctggagttatacctgtcaaatgac
ttgaacttcccatctatctcacaagctagtaatggtgtggatcacactcttaaagcaaga
tcaggttcattggtaatacccaaagcagaatccaaattgaaatcaagcgctgatcacaaa
gatacatctaaggaaagagatcgtatggaaaggtgtgagaagggtctgcgtctgcttaag
agtgcgtggccatccgacctggaccagccactttatgatgttgatcttgctataattctc
tgcgagatgaatgcatttaaagatgggcttttgtatctgtatgagaagatgaaactatat
aaagaggttattgcctgctacatgcaatcccaggaccatgaaggattgattgcatgctgc
aaaaagctgggggattctggtaagggaggagatccatctctctgggcagatctgctgaag
tattttggtgaacttggagaagattgctcaaaggaagtgaaggatgttctgacatatatt
gaaagggatgacatcttgcctcctattattgttcttcagacactgtccaggaatccatgc
cttacgctctctgtcattaaggattatattgctcggaagcttgagcaggagtcaaagctg
attgaagaagatcgacgagctattgagaagtatcaggaagacactttgacaatgagaaaa
gaaattcaggatctcaggacaaatgcgaggatatttcagctcagcaagtgcactgcttgc
accttcacccttgatcttcctgctgtacattttatgtgcatgcattcatttcatcagcgt
tgccttggcgataatgaaaaagaatgccctgagtgtgcttctgaatacagatctgttctt
gaaacaaaaagaagcctggagcagaattctaaagatcaagatcgattttttcagcaggtg
aagagttcaaaggatgggttttctgtgattgctgagtattttggaaaagggatcattagc
aaaaccagtaatggatccacaggcactggcaggacaggtgacacatcttccagcagtggc
ttctaa
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integrated database retrieval system
