KEGG   Populus alba (white poplar): 118047978
Entry
118047978         CDS       T07314                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
palz  Populus alba (white poplar)
Pathway
palz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:palz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    118047978
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:palz03019]
    118047978
Messenger RNA biogenesis [BR:palz03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     118047978
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_NUP159_NUP214 Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_DCAF12 Ge1_WD40 Beta-prop_SCAP Cytochrom_D1 CFAP43_N Beta-prop_HPS5 Tricorn_2nd Beta-prop_VPS8 Beta-prop_WDR11_1st Beta-prop_IFT140_1st Beta-prop_ACSF4 Beta-prop_pof12 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 118047978
NCBI-ProteinID: XP_034913352
LinkDB
Position
6:complement(12795617..12798494)
AA seq 321 aa
MKLAGLKSIENAHDESVWAATWIPATETRPALLMTGSLDETVKLWKPDELTLERTNTGHC
LGVVSVAAHPSGSIAASASLDSFVRVFDVDSNASIATLEAPPSEVWQMQFDPKGITLAVA
GGGSASVQLWDTEKWKLIATLSIPRQEGPKPTDKNSSKKFVLSVAWSPDGKRVACGSMDG
TISVFDVARAKFLHHLEGHFMPVRSLVYSPADPRVLFSASDDAHVHMYDAEGKSMIAALS
GHASWVLSVDASPDGAAIATGSSDKTVRLWDLGMRAAVQTMSNHGDQVWGVTFRPPGGPG
PRAGRLASVSDDKSLSLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaactagcaggtctaaaatcaatagagaatgctcacgacgagtcggtatgggcagcc
acatggatcccggccaccgagacccgtcccgctcttctaatgactggctcactcgacgag
acagtgaagctttggaagcctgacgagctcaccctggagcgcaccaacactggtcactgc
ctcggcgtcgtttcggttgcagcgcatccttccgggtccatcgccgcatcggcatctctc
gatagcttcgttcgagtgttcgatgtggactccaacgcaagcattgctactcttgaagct
cctccttctgaagtttggcaaatgcagttcgatcccaagggtatcactctagcagttgct
ggtggtggaagtgcatcagtccagctttgggatacagaaaaatggaagttgattgctacc
ctgtcgattccccgtcaagaagggcccaagcccaccgataagaatagcagcaaaaagttt
gtactatcagtggcatggagtcctgatgggaaacgggttgcttgtggctccatggatggc
actatttctgtttttgacgtagctcgagccaaattcttacaccatctagaaggccacttc
atgcctgtgcggtctcttgtgtattcccctgctgatccaagggtgctcttttctgcatcg
gacgatgcccatgtgcacatgtatgatgctgaggggaagagtatgatagcagccttgtca
ggtcatgcaagctgggtattaagtgttgatgcaagcccggatggagcagctattgcaaca
ggctcaagtgacaaaactgtaaggctatgggatctcggcatgcgggctgctgtgcagaca
atgagcaaccatggagatcaagtttggggagtgacatttcgaccaccaggtggtcctggt
ccccgtgcaggccggcttgctagtgtgtcagatgacaaaagcttatcactttatgattat
tcctga

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