Populus alba (white poplar): 118048048
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Entry
118048048 CDS
T07314
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
palz
Populus alba (white poplar)
Pathway
palz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118048048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palz03400
]
118048048
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118048048
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
118048048
NCBI-ProteinID:
XP_034913456
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Position
6:complement(14222136..14246002)
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AA seq
1105 aa
AA seq
DB search
MPRQKSILSFFQKPSLPSQSSDAGERTDGPQAPLFSAKQHNQNVSQPAIHGLVDSSIEIR
GTDTPPEKVPRQILPVNIKENEEAKVASLFSSIMHKFVKVDDREKPNGRNQVHSANVCST
SVTFTIPKELPQQGMDTLYSEKDNGFSSSGMVDQTSVLNIESVNDVPGPHTPGMRPLVPR
LKRILEDVPKFEDKNGCSFLNSSKRVKPLKDSASLIKNHEEISNSTSKFEWLDPAQIRDA
NGRRPNDPLYDKKTLYLPPDALKKMSASQKQYWTVKSQYMDVLLFFKVGKFYELYELDAE
IGHKELDWKMTFSGVGKCRQVGISESGIDDAVEKLVARGYKVGRVEQLETSDQAKSRGAN
SVIQRKLVQVVTPSTTTDHNMGPDAVHLLAIKEGNYGVDDGATAYGFAFVDCAALRVWVG
SINDDASHAALGALLMQISPKEVIYENRELSRGAQKELRKYSLIGSTTLQLSPVLPGTDF
VDASEVKNLIQSKDYFKWSSNPWNHALDSIMHQDISLCALGGLIGHLSRLMFDDVLRNAD
ILPYQVYKGCLRMDGQTLVNLEIFSNSADGGSSGTLFNYLDNCVTSSGKRLLRNWICHPL
KHVEGINNRLDVIENLMARSEIMLIIAQYLRKLPDLERMLGRVKVSFQASGSLALPLISK
KLLKQRVKVFGSLVKGLRNGMDLLLLLLKEEQLISSLSKNFKLPELLGSNGLEKFLVQFE
AAVDSEFPNYQNRDVTDSEAGMLSVLIELFIEKAAQWVEVIHAINCIDVLRSFAVTASMS
CGAMCRPVILPDSKAISFCEGEGGPVLKIKGLWHPFALGENGLPVPNDVFLGEDSDSQHP
RTVLLTGPNMGGKSTLLRATCLAVILAQLGCFIPGEKCVLSLADIIFTRLGATDRIMTGE
STFFIECTETASVLQNATQDSLVLLDELGRGTSTYDGYAIAYAVFRHLVEKINCRLLFAT
HYHPLTKEFASHPHVSLQYMACAFKSKPESYSKSDRDLVFLYRLASGACPGSYGLQVATM
AGIPEHVVEAASHAGQLMKNSTGESFKSSERRSEFSTLHEEWLKTLVNVSRIRDCNFDDD
DVYDTLFCLWHELKSSYESCSSKSR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccaaaaatcgatactctcgttcttccaaaaaccctcgctgcccagtcagagc
tccgacgccggagaaaggaccgatggtccgcaagctcctctgttctcggcgaagcaacat
aatcaaaacgtgtctcaacctgcgattcatggactggtggactcgtctattgaaattaga
ggaactgacacgccaccagaaaaggtgccacgtcagatattaccggtgaacatcaaggag
aacgaggaggccaaagttgcttcgcttttttcgagcataatgcataagttcgttaaggtc
gatgacagagaaaaacctaatgggaggaaccaggttcattctgctaatgtttgctctaca
tctgttacatttactatcccaaaagaattgcctcagcaaggaatggatacgctgtactct
gagaaagacaatggttttagttccagtggcatggttgatcaaacgagtgtcttgaatatt
gaaagtgtaaacgatgttcctgggccgcatacaccaggcatgcgaccgctagttcctcgt
ctgaagagaattctagaggacgttcctaagtttgaggataagaatggttgttccttcctg
aactctagcaaaagagtgaaaccactaaaggactcagcttccttgataaaaaatcatgag
gaaatatctaattcaacaagcaagtttgaatggcttgaccctgcccaaatcagggatgct
aatgggagaaggcccaatgatcctctctatgacaaaaagacgctttacttaccacctgat
gcattgaagaaaatgtcagcttctcaaaagcaatactggactgtcaaatctcagtacatg
gatgttctacttttctttaaagtgggaaaattctatgaactctatgaactggatgctgaa
attggtcacaaagagcttgattggaaaatgacattcagcggtgtggggaaatgtcggcag
gttggtatatctgaaagtggaattgacgatgctgttgaaaagctggtagctcgtggatat
aaagttggaagagtggagcaattggaaacatctgatcaagcaaaatctaggggtgcaaat
tctgtaatccaaagaaaattggtacaagttgtcaccccatcaaccacaactgaccataat
atggggcctgatgctgttcatcttcttgccataaaagagggaaactatggggtggatgat
ggtgcaactgcttatgggtttgcttttgttgattgtgctgctctacgagtttgggttgga
tcaatcaatgatgatgcgtcacatgctgctttgggggcattattgatgcaaatttcacct
aaggaagtcatatatgaaaatagagagctttccagaggcgctcagaaagaacttaggaag
tactcattaattggttctacaacactgcaattgtcaccagtgctgccaggcactgatttt
gtggatgcttctgaagttaaaaatttgattcaatcgaaggattactttaaatggtcttca
aatccatggaaccatgcacttgacagtataatgcaccaggacatatctctatgtgctctt
ggcgggcttattggtcatctatccagattgatgtttgatgatgttttaaggaatgcagat
attctaccctaccaagtttacaagggttgccttagaatggatgggcagactcttgttaat
ctggagatttttagtaacagtgctgatggtggttcatcaggtactttgtttaactatctt
gataactgcgtgacatcatctggaaagcggcttttgaggaattggatctgccatccactg
aaacatgttgaaggcattaataataggcttgatgttattgaaaatctaatggctcgttca
gaaattatgttaattattgctcaatatcttcgcaagcttccagatttagaaagaatgctt
ggacgagttaaggttagctttcaggcatcagggtctcttgcactgcccttgattagcaaa
aaattgttgaaacaacgagtgaaagtgttcgggtctctggtgaaagggcttcggaatgga
atggatttgttattgctattactgaaggaagagcaactaatttcatcattatcaaaaaat
tttaaacttccagagcttcttggtagtaatgggcttgaaaaattccttgtgcaatttgaa
gcagctgtagatagtgaattcccaaactaccagaatcgtgatgtgacagattcagaggct
ggaatgctttctgtgctgattgagttatttattgagaaagctgcacagtgggttgaagtc
attcatgcaatcaattgtattgatgtgcttagatcttttgcagtcacagcaagcatgtca
tgtggagctatgtgtagacctgttattttgcctgattcaaaagccatttctttctgtgag
ggggaaggagggcctgtacttaagattaaagggttatggcacccatttgccctcggagag
aatggattgcctgtcccaaatgatgtgttccttggtgaggattcagatagccaacatccc
cgcactgtgttgctgactggaccaaatatgggtggaaaatcaacacttctgcgtgccaca
tgtctagctgttatactagcacagcttggttgtttcattcctggtgagaagtgtgttctc
tcacttgctgacataatttttacgcggcttggtgccactgatcgaataatgacaggcgag
agtacattcttcattgagtgcacagaaacagcttcggtgcttcaaaatgccactcaggat
tctcttgtccttcttgatgaactgggtcgaggaacaagcacttatgatggatacgccatt
gcatatgctgtattccgccatcttgttgagaagataaactgtcgattgctttttgcaaca
cactatcacccgctcacaaaagaatttgcttctcatccacatgtttcattacaatacatg
gcttgtgcattcaagtcaaaacctgaaagctattctaaaagtgaccgggaccttgtcttc
ttgtaccggcttgcatctggagcatgcccagggagctacggattgcaagtggcaactatg
gctggcattccagagcatgttgttgaagctgcttcacatgctggtcagctgatgaaaaat
tcaactggagaaagtttcaagtcaagcgagcggaggtctgagttctcaactctccatgaa
gagtggttgaagaccctggtaaatgtctcacgaatcagagattgtaattttgatgatgat
gatgtttatgacacattgttttgcttgtggcatgagttgaagagctcgtatgaatcttgt
agctcgaagagtagatag
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