Populus alba (white poplar): 118049117
Help
Entry
118049117 CDS
T07314
Name
(RefSeq) THO complex subunit 4D isoform X1
KO
K12881
THO complex subunit 4
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
palz03015
mRNA surveillance pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118049117
09122 Translation
03013 Nucleocytoplasmic transport
118049117
03015 mRNA surveillance pathway
118049117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118049117
03041 Spliceosome [BR:
palz03041
]
118049117
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118049117
TREX complex
118049117
Spliceosome [BR:
palz03041
]
Complex C
Other components
EJC/TREX
118049117
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118049117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
118049117
NCBI-ProteinID:
XP_034914906
LinkDB
All DBs
Position
4:complement(8055706..8059975)
Genome browser
AA seq
272 aa
AA seq
DB search
MATTVDMSLDDIIKKNRERGRGRGRASRGRDRGPGRFFNNGRMSGAVRRGPLSVNARPPK
YSIAKPSRRIRSLPWQHDLLEDSIRAAGITGLEGGTKLYVSNLDYGVTNEDIRELFAEIG
DLKRFAVHYDKNGRSTGSAEVMYTRRSDAFSALKKYNNVLLDGRPMKIEIVGANPEVPIS
ARVNVTGANGKKKRTVVMTPGPGRGRGGAVNNHGSGLSRRGGGGPRNGMRSGRGRAQGRG
RGRGRGKKQPAEKSVDDLDKELESYHAEAMQT
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atggctacaactgtggatatgtctcttgatgacattataaagaaaaacagagagagaggt
agaggacgaggtagggccagccgtggccgtgatcgtggacctggtaggttctttaataat
ggaaggatgtcaggggcggttcgtagaggccctctctcagtgaatgctcggccaccaaaa
tactcaattgccaagccttcccgccgaattaggagtctgccctggcagcatgatttgctt
gaggatagcattagagctgcagggataacaggattagaaggtggaaccaagttatatgtt
tcaaacttggattatggcgtgaccaatgaagacataagggagctcttcgcagagattgga
gacttgaaacgatttgctgttcactatgacaaaaatggtcgctctactggctcagccgaa
gttatgtataccagaagaagtgatgcgttttctgctcttaagaagtataacaatgtactt
ttagatggaaggcctatgaagattgagattgtgggtgccaatccagaggtgcctatttcg
gctcgagtgaatgttactggagcaaatggaaagaagaagagaactgttgttatgacgcct
ggacctggtcgcggaagaggtggtgctgtgaataatcatggttctggtctgagccgtcgt
gggggtgggggtccaaggaatggtatgagaagtggccgtggtcgtgctcagggtcggggc
cgaggccgaggccgtgggaagaaacaacctgctgagaagtcagtagatgacctggataag
gaattggaaagttatcatgctgaagccatgcaaacttaa
DBGET
integrated database retrieval system
