Populus alba (white poplar): 118049210
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Entry
118049210 CDS
T07314
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03022
Basal transcription factors
palz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118049210
09124 Replication and repair
03420 Nucleotide excision repair
118049210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118049210
03036 Chromosome and associated proteins [BR:
palz03036
]
118049210
03400 DNA repair and recombination proteins [BR:
palz03400
]
118049210
Enzymes [BR:
palz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118049210
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
118049210
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
118049210
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
118049210
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
AAA_11
SNF2-rel_dom
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
118049210
NCBI-ProteinID:
XP_034915035
LinkDB
All DBs
Position
Unknown
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDHIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT
ISKPQGAIKLIYCTRTVHEMEKTLAELKLLHNYQVKHLGPAAKILAIGLSSRKNLCVNPN
VLEANNRDSVDAACRKRTASWVRALAAENPNVETCEFFENYERAASGAVLPPGVYTLQDL
RAYGKEKGWCPYFLARHMVQLANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLDGASRNISRIEQEINRFKATDANRLRDEYKRLVNGLALSGNLPG
SDSWLSNPALPDDILREAVPGNIRRAEHFLHVLRRLLQYLTVRLDTENVEKESPISFVAS
INNQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYSHGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGIVCFFV
SYSYMDGIINTWNESGLLKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKTGSSGKKTLLSQEDLEKMDDSGKQAMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaaatcgaggacgtgaccgtatacttcccgtacgatcacatatacccggag
caatactcctacatggtggagctaaagcgtgcactagacgctaaaggtcactgcctgctt
gaaatgcctacaggaacgggaaagacaatagccttactatcactaatcacaagctacact
atctctaaacctcaaggcgcaatcaagctaatttactgcactcgcacagttcacgagatg
gagaaaaccctagccgaattgaagttattgcataattatcaagtcaagcacctcggtcct
gctgccaagattttggcgattggattgtcttcgaggaagaatttgtgtgtaaatcctaat
gttttggaagcgaataatagggattcggttgatgctgcgtgtcggaaaaggactgcgagt
tgggttagggctttggccgcggagaatccgaatgtcgagacttgtgagttttttgaaaat
tacgagagggctgcttctggtgctgttttgcctcctggggtttatactcttcaggatcta
agggcatatgggaaagagaaagggtggtgtccatattttttggcaaggcatatggtgcag
cttgcgaatgtagtggtttatagttaccaatacttgcttgatccgaaggtggctgggatc
atatccaaggaaatgcagaaggaatctgttgttgtgtttgacgaggcgcataatatcgat
aatgtatgtattgaagcacttagtgttagtgtgaggaggcaaacacttgatggagcatca
agaaatatctcaaggattgaacaagagattaacaggttcaaggccactgatgctaataga
ctgcgtgatgagtacaagcggcttgttaatggtttggcattaagtggaaacttacctggc
tcagattcctggctttcaaatcctgccttgcctgatgacattctgagggaagcagttcct
ggaaatatacgccgggcagaacattttttgcatgttttacgaagattgctccagtatcta
acagtgcggttggatactgagaatgttgagaaggaaagccctattagctttgttgcctcc
ataaacaaccaagctggaatcgaccagaaaacactaaagttttgttatgatcgcctacat
tcacttatgttgacgttggaaataactgatacagatgagttcttgcatgtccaaacaata
tgtgactttgcaacactagtggggacatattctcatggattttccatcataattgaacct
tttgatgagagaatgccacatattcctgaccctgtattacagctcagttgccatgatgct
tctcttgctataaagcccgtgtttgaccggtttcagtcagtcgtaattacatctggaact
ctaagcccaattgatctctatccccgacttcttaatttccaccctgttgtcagtcgaagc
tttaagatgtccttgacaagagattgcatatgtccaatggttctcactcgtggaagtgat
caacttccagtgagtaccaaatttgatatgagaagtgatcctggtgttgtaaggaattat
gggaagctattggtggagatggtttctattgttccagatggaattgtgtgcttttttgtg
agttattcgtacatggatgggattatcaacacctggaatgaaagtggacttctaaaggaa
ataatgcaacataagcttgtctttattgagacccaagatgtggtagaaactactttggct
cttgacaactatcgtagggcttgtgattgtgggagaggtgctgtttttttctctgttgcc
aggggaaaagtagctgaaggaatagattttgatcggcattatggcagactagtgatcatg
tttggtgttcctttccagtacaccttaagcaagatactacttgcacggttggagtatcta
agggacacatttcagattaaggaaggggatttcctaacatttgatgccctgagacaagct
gctcaatgtgtgggccgagtgatccggtcaaaggctgattacggaatgatgatatttgct
gacaaaaggtatagccgtcatgacaagcgttctaaattgcctggttggattttgtctcat
ttacgtgatgcacacctgaatttgagcactgacatggcactgcatatagcacgcgagttt
cttcggaagatggctcaaccatatgacaagactggttctagcggtaagaaaaccctgtta
tcacaagaagatttggaaaagatggatgacagcggtaagcaggcgatgctgtattaa
DBGET
integrated database retrieval system
