Populus alba (white poplar): 118050032
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Entry
118050032 CDS
T07314
Name
(RefSeq) rRNA biogenesis protein RRP5 isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
palz
Populus alba (white poplar)
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
palz03009
]
118050032
Ribosome biogenesis [BR:
palz03009
]
Eukaryotic type
90S particles
Other 90S particles
118050032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
NRDE-2
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
118050032
NCBI-ProteinID:
XP_034916138
LinkDB
All DBs
Position
16:5881144..5899075
Genome browser
AA seq
1938 aa
AA seq
DB search
MAAPSKKKQQNPKQNDGPKFNKASQKQFKAKQTKNKKSFSNDAVVKDASIALQLEDDVPD
FPRGGKSSLSQREREEIRAQVDEEFEGEERRLNKKNKKGKKFQNKSSQLSGDDLGSLFGD
VLTGKLPRFANKITMKNISPGMKLWGVVTEVNEKDLVISLPGGLRGLVRSVDAVDPVLSD
QIEDGEGSLPSVFHVGQLVSCIVLKLDDDKNDNKKRKIWLSLRLSLLHNGFSLDAVKEGM
VLTAYVKSIEDHGFILHFGLSSFMGFLPKNSQAESRDSEVKTGQFLQGIVTRIDKTRKVV
YLSSDPDTVSKCVTKDLKGISIDLLIPGMMVDARVQSTLENGIMLSFLTYFTGTVDMFHL
QNTFPTSNWKDDYAKNKKVNARILFIDPSTRAVGLTLNQHLVHNNSPPSSVKVGDIYDIA
KVVRVDKGMGLLLEIPSTPLPTPAFVNVSDVAEDEVRKLEKKFKEGSNVRVRILGYRHLE
GLATGILKASAFEGSVFTHSDVKPGMATRAKIIAVDSFGAIVQFPGGVKALCPLRHMSEF
EIAKPRKKFKVGAELFFRVLGCKSKRITVTHKKTLVKSKLPILSSYSDATDGLITHGWIT
KIEKPGCFVHFYNGVQGFAPRSELGLEPGSDAISTYQVGQVVKCRVISSIAASRRINLSF
IMKPLRFSEEDGIKMGSVVTGVIDKVTASSVIVYVNAKDYLKGTIATEHLSDHHEHAALM
KSVLKPGYEFDQLLVLDIESNNLALSAKYSLIKSASQLPSDLSQIRPQSIVHGYICNMIE
TGCFVRFLGNLTAFSPRSKAMDDQRSQLSEAFYVGQSVRSNILDVNNETSRITVSLKQSC
CSSTDACFLQEYFLLENKIADLQSSDSKGRDLKWVEGFHIGSTIEGKIQESKEFGVVVSF
EKHNDVFGFVSHHQLGGAIVKAGANVRAAVLDVAKTERLVDLSLKLEFLDKSRDKSSNSL
THKKKRKGEMSKDLEVHQTVNAVVEIVKENYLVLSIPEHNYAIGYASVSDYNTQKISQKQ
FLNGQSVSATVMALPTPSTAGRLLLLLKSISEVTETSSSKKAKRKSSCNVGSLVQAEITE
IKPLEMRLKFGIGFRGRIHITEVNDNCLLENPFSNFRVGQTVSARIIAKAGQSDNKKSQL
WDLSIKPKMLEDSCTIEDKLVPKEYEFSSGQRVSGYVYKVDGEWAWLTISRHLKAKLFVL
DSACEPIELQEFQKRFYVGKAVTGHVLNYNKEKASLRLALHPFAASQTLVDGGAPVMDDL
QSNAPWDNVTAHIQEGDIVGGRISKILPGVGGLLVQLGPHIHGRVHFTELQDSWVPDPLS
AYKEGQFVKSKVLEISHPVKGTIHIDLSLRLSLNGLLGQNSAEFSNNQDAPSKRVDKIED
LQPDMVVQGYVKNVSSKGCFISLSRKLDAKILLSNLSEGYIDDPEKEFPIGKLLTGRVLS
VEHLSKRIEVTLKSSVSNVSKSEKSDLSRLHVGEIISGRIKRVESYGLFIALDHTNLVGL
CHVSQLLDHIGNIESKYKAGEKVTAKILKVDEERRRISLGMKNLDVRDDMNSSKEESDEE
MSENESMDDSNAQIKIIPESSLLGIHNIDVECQNEGSILAQAESRASIPPLEVTLDDMEH
SHPDDVLFQNQGHIDEADTMVKKNKQEKKKPKKLSEQEISAAEERRLEEDEPRTADEFEM
VIRSSPNNSFLWIAYMRFMLSLADIEKARSIAERALNTINIREEDEKLNIWVAYFNLENE
YGNPPEDAVKKVFQRALQYCDPKKVHLALLKMYKKTNQNKLAEELLDKMSKKFKHSCKFW
LKRVKWLLKQKQDGVQSVVQRALLCLPRHKHIKFISQTAIREFKCGVADRGRTLFEEILR
EYPKRTDLWSVYLDQEIKLGDADVIRALFERAISLSLPPKKMKFLFKKYLEYEKSYGDEK
QIESVKQKAMEYVQNTLA
NT seq
5817 nt
NT seq
+upstream
nt +downstream
nt
atggcagctccctcaaagaaaaaacaacagaatccaaaacaaaacgacggtccaaaattc
aacaaagcatcacagaagcaattcaaagcgaagcagacgaaaaacaagaagagtttttca
aacgacgccgtcgtaaaagatgcgtctattgctttgcaacttgaagatgacgtccctgac
ttccctcgaggtggaaagagttcgttgagtcagagagaaagagaggaaattagagcacaa
gttgatgaagaattcgagggggaggagaggcgtttgaataagaagaataagaaggggaag
aagtttcaaaacaagagtagtcaattatctggagatgatttaggttccctttttggcgat
gttttaactggaaaactgcctcgttttgctaataagattacaatgaagaacatttctcct
ggaatgaagctttggggagttgttactgaagtaaacgagaaggaccttgtaattagtctt
cctggaggattgcgtggattagtacgttctgtggatgcagttgatcctgttttgagtgat
caaattgaggatggtgaaggtagccttccaagtgtattccatgtagggcagctggtgtca
tgcattgtgttgaagttggatgatgataaaaacgataacaagaaaagaaagatttggctt
tctctgcgcctttcgttattgcacaatggcttctcattagatgctgttaaggaagggatg
gtcctcaccgcatatgtcaaaagcattgaagatcatggtttcatcctgcattttggtttg
tcatcgtttatgggatttttgccaaagaacagccaagctgagagcagggattctgaagtg
aaaactgggcaatttttacaggggattgttacaaggattgataaaactcggaaagttgtt
tatctgagctctgacccagatacagtgtctaaatgtgtgactaaggatcttaagggcatt
tcaattgatcttctcattccaggcatgatggttgatgcccgtgtacagtcgacccttgaa
aatgggataatgttatcattccttacatactttactggaactgttgatatgtttcattta
caaaatactttccctacttcaaattggaaggatgattatgccaagaataaaaaggtcaat
gctcgtatattatttattgatccctcaactagagctgttggtttgactctcaatcaacat
cttgttcacaacaattcaccgccatctagtgttaaagttggagatatttatgacattgca
aaagtagtcagggtagataaaggcatgggacttctacttgaaatcccatctactccgctg
ccaactccagcgtttgttaatgtatctgatgtggctgaagatgaggtacggaagcttgaa
aagaagttcaaggaaggaagtaatgttcgtgttcgaatccttgggtataggcatttggaa
gggcttgccacggggattttgaaggctagtgcttttgaaggatctgtattcacccactct
gatgtcaagccaggcatggcaacaagggctaaaatcatagctgttgacagctttggggct
attgtacaatttcctggtggagtgaaggcactttgcccgcttcgacatatgtctgaattt
gaaattgcgaaacctcggaaaaaattcaaggttggagctgagctgtttttccgtgtgctg
ggttgcaagtccaagagaataactgtgacacacaagaaaactcttgttaaatctaaactt
ccaattcttagttcatattctgatgcaactgatggactaataacacatggttggataaca
aagattgaaaagcctggatgctttgtccatttttacaatggagtccagggatttgccccc
agatctgagcttggattagaaccaggaagtgatgcaatttcaacttatcaagttgggcag
gttgtcaaatgcagagtaataagttctattgctgcttcacgcaggatcaatcttagtttc
ataatgaagcctctaaggttttctgaagaagatggcatcaagatgggtagtgtggttact
ggagttattgataaagttactgcctcttcagtaatagtttatgttaatgcaaaagactac
ttgaaggggacaattgctaccgagcatttgtcagatcaccatgaacatgctgccttgatg
aagtcagttttgaagcctggatacgagtttgatcaactactggtcctagatattgagagc
aacaatttggctctctctgcaaaatattctcttatcaagtctgcttctcagcttccttcg
gatctaagccagattcgtcctcagtcaatagtccatgggtacatctgtaacatgattgaa
actggctgctttgttcgctttcttgggaatttgacggctttctcccctagaagcaaggca
atggatgaccaaagatctcagctttcagaagccttttacgttggacaatctgttcgtagt
aatatactcgatgttaacaatgaaacaagcagaataacagtgtctttgaagcagtcatgc
tgctcatctacagatgcatgctttcttcaagaatactttctcttagagaacaagattgct
gatctgcaatcttcagattctaaaggtcgtgacttgaagtgggttgaaggatttcatatt
ggcagcaccattgagggaaaaattcaggagtcaaaggaattcggtgttgttgtcagtttt
gagaaacataatgatgtttttggttttgtttctcatcaccagttaggtggagcaattgtg
aaagcaggtgcaaatgttcgagctgctgttcttgatgttgccaagacagaacgccttgtt
gatttatctctaaagcttgagtttttggataaatcaagagacaaaagttctaacagctta
actcacaagaagaaacgaaaaggagagatgtcaaaggacttggaggtgcaccaaacagta
aatgcagttgttgagattgtgaaagaaaattacctggttctgtcaattcctgagcataac
tatgccataggttatgcgtcggtatcagactataatacacaaaagatatctcagaaacaa
tttctgaatggacaaagcgttagtgccacagttatggctcttccaaccccttctactgca
gggaggttgcttttgcttctgaaatctattagtgaggtgactgagacatccagttcaaag
aaggccaagagaaagtctagctgtaatgttggatccctggttcaggcagagattactgaa
atcaagcctcttgaaatgagattgaaattcggtattggtttccgtggaaggattcatata
acagaggtcaacgataattgtcttttggagaatccatttagcaacttcagagttggccaa
acagtgtctgcgaggattattgctaaggctggtcaatctgacaataaaaaaagtcagctg
tgggatttgtctatcaaaccaaaaatgcttgaagattcgtgcacgatagaggataaactt
gtgcccaaggaatacgagttttcatctgggcaacgcgtctctggttatgtatataaagtg
gacggtgaatgggcctggttaacaatatctcgacatttgaaggcaaagctttttgttctc
gacagtgcttgtgaacctattgagcttcaagaattccaaaaaagattctatgttgggaag
gccgtgactggtcatgttttgaactataacaaggagaaagcatcactacggttggcgctc
catccatttgctgcctctcaaactcttgttgatgggggagctccagttatggatgaccta
cagagtaatgctccctgggacaatgttactgctcatattcaagaaggagatattgtaggt
ggtagaatttccaagatacttccaggtgttggtggattgctggtgcaacttggtcctcat
atacatggcagggttcattttaccgaacttcaagactcgtgggttcctgatccattgtct
gcatacaaagaaggtcaatttgtcaaatccaaggtcctagagataagccatccagtcaag
ggtaccatccacatcgatctgtcattacgtttatctttgaatggcttgcttggtcaaaat
tcagcagagttctcgaataatcaggatgctcccagcaaacgtgtggataagattgaggat
ctacaacctgacatggttgtgcagggttatgttaagaatgtttcatcaaaaggatgtttc
atttcactttcaaggaaacttgatgcaaaaattctcctctcaaatctgtctgagggatat
attgatgatcctgaaaaagaattccccatcgggaaacttttaactggccgggtactatct
gtggagcatctatcaaagcgaattgaagttaccttgaaatcgagcgtaagcaacgtgtca
aaatctgaaaagagtgacctgagtcgcctacatgttggggaaataatttctggcaggatt
aaacgggtggaatcatatgggttgtttatcgcacttgaccacacaaatttggttggattg
tgtcatgtgtcacagcttttggatcatattggtaacattgaatcgaaatataaagctggg
gagaaggttacagcaaagattttgaaggtggatgaggaaaggcgccgaatctctcttgga
atgaagaacttagatgttcgggatgatatgaactcttcaaaagaagaatctgatgaagaa
atgagtgaaaatgaatctatggatgacagcaatgctcaaataaaaataattccggagagc
agtttgcttggtatccataacattgatgttgaatgccagaatgaaggttcaattcttgcc
caagcagaatccagggcctcaattcctccgcttgaggtcacacttgatgacatggagcac
tctcatccagatgatgtcctttttcaaaaccaagggcatattgacgaggcagacactatg
gttaagaagaataaacaagaaaagaagaaaccaaagaaattgagtgagcaagaaattagt
gctgctgaagagagacggctagaggaagatgaaccaaggactgctgatgaatttgagatg
gtgattcgaagctctcccaataacagttttctttggatagcatacatgcgcttcatgctg
tctttggctgatatcgagaaggctcgctctattgctgaaagggctttgaatacaattaat
attcgagaagaggatgagaagctaaatatttgggtggcttacttcaacttggaaaatgaa
tatggaaatcctcctgaggatgctgttaagaaagtatttcagagagcattgcaatattgt
gatccaaagaaggtccatctggcactcttgaaaatgtataagaagactaatcagaataaa
ttagctgaggagcttcttgacaaaatgagcaagaagttcaagcattcatgcaagttttgg
ttgaaacgggtaaagtggcttctcaagcaaaagcaagatggggttcagtctgttgtgcaa
cgtgctcttttatgccttcctcgccataagcacatcaagttcatctcgcagacagctatc
cgtgagttcaaatgtggggttgctgatagagggagaaccctgtttgaagaaattttgaga
gaatacccaaagagaacagacttatggagtgtttatcttgatcaggaaattaaacttgga
gacgcagatgtgattcgtgcactttttgagagggcaattagtctgagtcttccacctaaa
aagatgaaatttttattcaagaaatatctggagtatgagaagtcttatggtgatgaaaaa
cagattgagtctgtgaaacagaaggccatggaatatgttcagaataccctggcctga
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integrated database retrieval system
