Populus alba (white poplar): 118050214
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Entry
118050214 CDS
T07314
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
palz
Populus alba (white poplar)
Pathway
palz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118050214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
palz03021
]
118050214
03036 Chromosome and associated proteins [BR:
palz03036
]
118050214
Transcription machinery [BR:
palz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118050214
Coactivators
SAGA/TFTC/STAGA complex
118050214
Chromosome and associated proteins [BR:
palz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
118050214
STAGA complex
118050214
TFTC complex
118050214
SAGA complex
118050214
SLIK complex
118050214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
WD40_like
Beta-prop_VPS8
Beta-prop_DCAF12
WD_LRWD1
PROPPIN
SUIM_assoc
Motif
Other DBs
NCBI-GeneID:
118050214
NCBI-ProteinID:
XP_034916367
LinkDB
All DBs
Position
6:complement(23475676..23483756)
Genome browser
AA seq
675 aa
AA seq
DB search
MDEEAVVKFVETYLKKKGFKQAELAFHEEIQQQQQQQNNSNNAINIHSDPDLSTLLHSLS
QPEDSPARYQEEYSKLRTWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQHARNFFN
SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSDELMMQYLRKSK
STIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE
RLEKTGGFLSDSEKTEGETKEGDVDENKKRSMDGGKQGASIKKSKKDKAASATAKAVRLE
ANTVPAAPRVKPELPLPVMPAEVEQSILEDLRNRVQLSSTTLPSVSFYTFINTHNGLNCS
SISHDGSLVAGGFSDSSLKVWDMAKLGQQAGNSVLQGENDTAPSEHLLGPNSGKRSYTLF
RGHSGPVHSATFSPLGDFILSSSADTTVRLWSTELNANLVCYKGHNYPVWDVQFSPVGHY
FASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSG
ECVRIFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCISPMMGHHSCVWSLAF
SCESSLLASGSADCTVKLWDVTTSTKPAKTEENKSGNTHRLRLLKTLPTKSTPVSTLRFS
RRNLLFAAGALSRSQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaagctgtggtgaagtttgtggagacgtatttgaagaagaaagggttcaag
caagcagagcttgctttccatgaagaaatccaacaacaacagcaacaacaaaacaacagc
aataatgctatcaatatccactcggatcctgatctctcaaccctccttcactccctctct
caaccagaggatagtccagcacgttaccaagaggagtatagtaaactaagaacttgggct
tatagttcgcttgatttgtacaagcatgagttgcttcgagtgctttatccagtgtttgtc
cattgttatatggatattgttgctaaagggcatatccaacatgcaagaaattttttcaat
agcttccgtgaagatcatgaaatgatgcactcacgagaccttcaaaagttggaaggagtt
ctttctccctctcatctggaggagatggaatttgctcatactcttaggcagagcaaagtc
aacattaagatatgtcagtactccgatgagctcatgatgcagtatcttcggaagtcaaaa
tccactataatacttgggattgtcaatgagcatattaacttccaagtttctcctggacag
cccatctcaatttctgatgatcctgatgctgttacattaattggaagcagccaggatgca
gctaatcagataaataaaaaagaaatacattgggggttgcttgaagattctttggaagaa
cgcttggagaagacagggggttttctctcagattctgaaaagacagaaggagaaaccaaa
gagggggacgtggatgagaacaagaaaagatcaatggatggtggaaagcaaggtgcttca
ataaaaaagtcaaaaaaggataaggctgctagtgcaacagctaaagctgttcgtcttgaa
gcgaatacagtacctgcagcaccacgagtcaaacccgagcttcctttgccagtaatgcca
gctgaagtggaacagtctattcttgaggacttgagaaaccgtgtacagttgagtagtacg
acactaccatctgttagcttttatacctttatcaacacacataatggtttaaactgttct
tcaatatcccatgatggatccttggttgctggtggattctcagactcctcactgaaggtt
tgggacatggcaaagcttggacagcaagctggcaattctgttttgcagggtgaaaatgat
actgctccgagtgaacatttattggggccaaacagtggcaaaagatcttatactttgttt
cggggtcattcgggtccggttcattcagccacttttagcccccttggggattttattttg
tcttcttcagcagatacaacagttcgattatggagcacagaactcaatgcaaatcttgtt
tgctacaaaggccataattaccctgtctgggatgttcagttcagtcccgtgggacattat
tttgccagtgcttcgcatgatcgcacagcaaggatttggtctatggataggatacagcct
ttgaggataatggctggtcacttgtccgatgttgattgcgtgcaatggcatgtcaactgc
aattacattgccactggctccagtgacaaaacagttcgactgtgggatgtacagagtggg
gagtgtgtccgcatttttattggtcataggagtatgattttgtcattggccatgtcacct
gacggtcgatacatggcttctggtgatgaagatggcactatcatgatgtgggacctctca
agtggccgctgcatatcgcctatgatgggacaccattcatgtgtatggtcacttgccttc
agttgtgaaagttcccttcttgcttctggttcggctgattgtactgtaaaattatgggat
gtaactacaagcacaaagccggcaaagacagaagaaaacaaaagtggaaatacacacaga
ttgagattgctaaaaactttgccaacgaagtctactcccgttagcactttgaggttttcg
cgtaggaatctccttttcgctgctggtgccctctctagaagtcagtga
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